Variant report

Variant	rs4143626
Chromosome Location	chr8:113279478-113279479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1019350	0.88[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1019351	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10505176	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs10955617	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10955618	0.86[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1158895	0.86[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11774512	0.86[EUR][1000 genomes]
rs11775013	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11775082	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11776386	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11778155	0.92[CEU][hapmap]
rs11778209	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11778262	0.86[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11778443	0.87[CEU][hapmap]
rs11778532	0.81[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11780474	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11782384	0.82[CEU][hapmap]
rs11783361	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11783495	0.82[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11783519	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11784683	0.82[CEU][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11785270	0.82[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11785419	0.86[CEU][hapmap]
rs11786836	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11989521	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1420857	0.82[CEU][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1420861	0.80[EUR][1000 genomes]
rs1492676	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1548986	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16883301	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16883320	0.82[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16883325	0.82[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16883359	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16883360	0.86[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16883401	0.82[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16883404	0.82[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16883432	0.82[CEU][hapmap]
rs16883437	0.86[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16883454	0.82[CEU][hapmap]
rs16883506	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs1861753	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1861754	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1861755	0.82[CEU][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1948411	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1994795	0.82[CEU][hapmap]
rs1994796	0.81[CEU][hapmap]
rs2052339	0.87[CEU][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2098455	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2111426	0.86[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2111427	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2201203	0.86[CEU][hapmap]
rs2353271	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3922407	0.86[CEU][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3950674	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4398953	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4428695	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55691798	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59534399	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62514386	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62514388	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62514389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62514394	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62514395	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62514396	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62514397	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62514400	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62514401	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62514402	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62514417	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62514453	0.83[EUR][1000 genomes]
rs6415459	0.82[CEU][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7009195	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72672877	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72672894	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72674722	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72674733	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72674741	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72674746	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7820425	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7825635	0.82[CEU][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7826270	0.86[CEU][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7844829	0.91[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs888254	0.86[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs929686	0.86[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs950983	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs990616	0.86[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113275400-113280200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:113276200-113280200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:113276200-113280400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr8:113276400-113280200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:113278000-113281800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:113278200-113281400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:113278600-113280800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:113279200-113279600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:113279200-113279800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr8:113279200-113281000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:113279200-113281200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr8:113279400-113281000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:113279400-113281400	Enhancers	Cortex derived primary cultured neurospheres	brain

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