Variant report

Variant	rs10955617
Chromosome Location	chr8:113241438-113241439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:113234003..113236007-chr8:113240691..113242262,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1019350	0.82[EUR][1000 genomes]
rs1019351	0.83[EUR][1000 genomes]
rs10955618	0.82[EUR][1000 genomes]
rs1158895	0.81[EUR][1000 genomes]
rs11775013	0.80[EUR][1000 genomes]
rs11775082	0.80[EUR][1000 genomes]
rs11776386	0.81[EUR][1000 genomes]
rs11778209	0.80[EUR][1000 genomes]
rs11778262	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11778532	0.82[EUR][1000 genomes]
rs11780474	0.80[EUR][1000 genomes]
rs11783119	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11783361	0.80[EUR][1000 genomes]
rs11783495	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11783519	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11784683	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11785270	0.82[EUR][1000 genomes]
rs11786836	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989521	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1420857	0.81[EUR][1000 genomes]
rs1420861	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1492676	0.80[EUR][1000 genomes]
rs1548986	0.82[EUR][1000 genomes]
rs16883301	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16883320	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16883325	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16883359	0.83[EUR][1000 genomes]
rs16883360	0.81[EUR][1000 genomes]
rs16883401	0.81[EUR][1000 genomes]
rs16883404	0.82[EUR][1000 genomes]
rs16883437	0.81[EUR][1000 genomes]
rs1861753	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1861754	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1861755	0.83[EUR][1000 genomes]
rs1948411	0.80[EUR][1000 genomes]
rs2052339	0.83[EUR][1000 genomes]
rs2052344	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2098455	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2111426	0.83[EUR][1000 genomes]
rs2111427	0.83[EUR][1000 genomes]
rs2353271	0.82[EUR][1000 genomes]
rs3922407	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3950674	0.80[EUR][1000 genomes]
rs4143626	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4398953	0.80[EUR][1000 genomes]
rs4428695	0.80[EUR][1000 genomes]
rs55691798	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59534399	0.83[EUR][1000 genomes]
rs62514386	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62514388	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62514389	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62514394	0.82[EUR][1000 genomes]
rs62514395	0.82[EUR][1000 genomes]
rs62514396	0.82[EUR][1000 genomes]
rs62514397	0.82[EUR][1000 genomes]
rs62514400	0.82[EUR][1000 genomes]
rs62514401	0.82[EUR][1000 genomes]
rs62514402	0.82[EUR][1000 genomes]
rs6415459	0.83[EUR][1000 genomes]
rs6469409	0.83[EUR][1000 genomes]
rs7009195	0.82[EUR][1000 genomes]
rs72672877	0.83[EUR][1000 genomes]
rs72672894	0.82[EUR][1000 genomes]
rs72674722	0.80[EUR][1000 genomes]
rs72674733	0.80[EUR][1000 genomes]
rs72674746	0.80[EUR][1000 genomes]
rs7820425	0.82[EUR][1000 genomes]
rs7825635	0.82[EUR][1000 genomes]
rs7826270	0.82[EUR][1000 genomes]
rs7844829	0.82[EUR][1000 genomes]
rs888254	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs929686	0.83[EUR][1000 genomes]
rs950983	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs990616	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv891322	chr8:112978128-113267916	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113235200-113265400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:113241400-113241800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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