Variant report

Variant	rs2052344
Chromosome Location	chr8:113205436-113205437
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1019350	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs10505176	0.86[CEU][hapmap]
rs10955617	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10955618	0.86[CEU][hapmap]
rs1158895	0.86[CEU][hapmap]
rs11775013	0.86[CEU][hapmap]
rs11778155	0.92[CEU][hapmap]
rs11778209	0.86[CEU][hapmap]
rs11778262	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs11778443	0.87[CEU][hapmap]
rs11778532	0.93[CEU][hapmap];0.80[JPT][hapmap]
rs11782384	0.88[CEU][hapmap]
rs11783119	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11783495	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs11784683	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs11785270	0.88[CEU][hapmap]
rs11785419	0.86[CEU][hapmap]
rs11786836	0.85[EUR][1000 genomes]
rs11989521	0.82[EUR][1000 genomes]
rs1420857	0.88[CEU][hapmap]
rs1420861	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1492676	0.88[CEU][hapmap]
rs16883301	0.94[CEU][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes]
rs16883320	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs16883325	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs16883359	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs16883360	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs16883401	0.88[CEU][hapmap]
rs16883404	0.88[CEU][hapmap]
rs16883432	0.88[CEU][hapmap]
rs16883437	0.86[CEU][hapmap]
rs16883454	0.88[CEU][hapmap]
rs16883506	0.86[CEU][hapmap]
rs1861753	0.87[JPT][hapmap];0.81[EUR][1000 genomes]
rs1861754	0.93[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs1861755	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs1948411	0.88[CEU][hapmap]
rs1994795	0.88[CEU][hapmap]
rs1994796	0.81[CEU][hapmap]
rs2052339	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs2098455	0.94[CEU][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes]
rs2111426	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs2201203	0.86[CEU][hapmap]
rs2353271	0.87[CEU][hapmap]
rs3922407	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs6415459	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs6469409	0.94[EUR][1000 genomes]
rs7820425	0.88[CEU][hapmap]
rs7825635	0.88[CEU][hapmap]
rs7826270	0.86[CEU][hapmap]
rs7827158	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7844829	1.00[CEU][hapmap]
rs888254	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs929686	0.86[CEU][hapmap]
rs950983	0.81[EUR][1000 genomes]
rs990616	0.86[CEU][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv891321	chr8:112978128-113229425	Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv891322	chr8:112978128-113267916	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113205000-113207200	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr8:113205200-113207200	Enhancers	Skeletal Muscle Female	skeletal muscle

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