Variant report

Variant	rs2098455
Chromosome Location	chr8:113264960-113264961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1019350	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1019351	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10505176	0.93[CEU][hapmap]
rs10955617	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10955618	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs1158895	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs11775013	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs11775082	0.86[EUR][1000 genomes]
rs11776386	0.87[EUR][1000 genomes]
rs11778155	0.92[CEU][hapmap];0.81[CHB][hapmap]
rs11778209	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs11778262	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11778443	0.93[CEU][hapmap]
rs11778532	0.93[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs11780474	0.86[EUR][1000 genomes]
rs11782384	0.94[CEU][hapmap]
rs11783119	0.85[EUR][1000 genomes]
rs11783361	0.86[EUR][1000 genomes]
rs11783495	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11783519	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11784683	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11785270	0.94[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs11785419	0.93[CEU][hapmap]
rs11786836	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11989521	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1420857	0.94[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs1420861	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1492676	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs1548986	0.88[EUR][1000 genomes]
rs16883301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16883320	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16883325	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16883359	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16883360	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16883401	0.94[CEU][hapmap];0.83[CHB][hapmap];0.87[EUR][1000 genomes]
rs16883404	0.94[CEU][hapmap];0.86[CHB][hapmap];0.88[EUR][1000 genomes]
rs16883432	0.94[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs16883437	0.93[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs16883454	0.94[CEU][hapmap];0.83[CHB][hapmap]
rs16883506	0.93[CEU][hapmap]
rs1861753	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1861754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1861755	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1948411	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs1994795	0.94[CEU][hapmap]
rs1994796	0.87[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2052339	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2052344	0.81[EUR][1000 genomes]
rs2111426	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2111427	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2201203	0.93[CEU][hapmap]
rs2353271	0.93[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs3922407	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3950674	0.86[EUR][1000 genomes]
rs4143626	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4398953	0.86[EUR][1000 genomes]
rs4428695	0.86[EUR][1000 genomes]
rs55691798	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59534399	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62514386	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62514388	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514389	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62514394	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62514395	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62514396	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62514397	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62514400	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62514401	0.88[EUR][1000 genomes]
rs62514402	0.88[EUR][1000 genomes]
rs62514417	0.84[EUR][1000 genomes]
rs6415459	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6995441	0.81[YRI][hapmap]
rs7009195	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72672877	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72672894	0.88[EUR][1000 genomes]
rs72674722	0.86[EUR][1000 genomes]
rs72674733	0.86[EUR][1000 genomes]
rs72674741	0.85[EUR][1000 genomes]
rs72674746	0.86[EUR][1000 genomes]
rs7820425	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7825635	0.94[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs7826270	0.93[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs7827158	0.88[CEU][hapmap];0.87[JPT][hapmap]
rs7844829	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs888254	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs929686	0.93[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs950983	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs990616	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv891322	chr8:112978128-113267916	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv982152	chr8:113261900-113265476	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113235200-113265400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:113259400-113266800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:113263400-113265600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:113264400-113269200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:113264600-113265200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:113264600-113268600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:113264800-113265200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:113264800-113265200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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