Variant report

Variant	rs1492904
Chromosome Location	chr1:172739006-172739007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172721667..172723809-chr1:172736769..172739376,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10449225	0.85[ASN][1000 genomes]
rs10912474	0.85[ASN][1000 genomes]
rs10912477	0.81[ASN][1000 genomes]
rs1102721	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1102723	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1102724	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1102725	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1102726	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1102727	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1102728	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1102730	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2077690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2131374	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2639634	0.81[AMR][1000 genomes]
rs2639636	0.81[AMR][1000 genomes]
rs4916195	0.81[ASN][1000 genomes]
rs4916280	0.81[ASN][1000 genomes]
rs6662628	0.81[ASN][1000 genomes]
rs6684651	0.81[ASN][1000 genomes]
rs6684988	0.81[ASN][1000 genomes]
rs6700605	0.85[ASN][1000 genomes]
rs7533095	0.81[ASN][1000 genomes]
rs7547813	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7548472	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs859715	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs859720	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs859721	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs859722	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs859723	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs859731	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs859732	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs859733	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs859734	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs859735	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs859736	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs860922	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs865962	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs916366	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1492904	RP1-15D23.2	cis	lung	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172738800-172740000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:172739000-172739400	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr1:172739000-172739800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:172739000-172739800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr1:172739000-172740000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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