The 2.0 version of rSNPBase

Variant report

Variant rs6662628
Chromosome Location chr1:172796261-172796262
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172788800-172797000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:172789000-172796600 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr1:172789000-172797000 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr1:172791200-172806200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr1:172795000-172797200 Enhancers Dnd41 blood
6 chr1:172795200-172796600 Enhancers Primary hematopoietic stem cells blood
7 chr1:172795200-172797400 Enhancers Primary T helper cells fromperipheralblood blood
8 chr1:172795200-172797600 Enhancers Primary T helper cells PMA-I stimulated --
9 chr1:172795200-172797800 Enhancers Primary T helper 17 cells PMA-I stimulated --
10 chr1:172795400-172796400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr1:172795400-172796400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
12 chr1:172795400-172796600 Enhancers Placenta Amnion Placenta Amnion
13 chr1:172795400-172797800 Enhancers Primary T helper naive cells from peripheral blood blood
14 chr1:172795400-172797800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
15 chr1:172795400-172798200 Enhancers Primary hematopoietic stem cells short term culture blood
16 chr1:172795400-172798200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
17 chr1:172795600-172796600 Enhancers Fetal Stomach stomach
18 chr1:172795600-172796800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
19 chr1:172795600-172797200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
20 chr1:172795800-172796400 Enhancers Stomach Mucosa stomach
21 chr1:172795800-172796400 Enhancers A549 lung
22 chr1:172795800-172797000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
23 chr1:172796000-172796400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr1:172796000-172796400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr1:172796000-172796400 Enhancers Monocytes-CD14+_RO01746 blood
26 chr1:172796000-172796400 Enhancers NHLF lung
27 chr1:172796000-172796600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
28 chr1:172796000-172796800 Weak transcription Primary T killer naive cells fromperipheralblood blood
29 chr1:172796000-172797000 Enhancers Duodenum Mucosa Duodenum
30 chr1:172796000-172797200 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr1:172796000-172797400 Enhancers Fetal Lung lung
32 chr1:172796000-172797800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr1:172796000-172798000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr1:172796000-172806200 Weak transcription HMEC breast
35 chr1:172796000-172813800 Weak transcription Small Intestine intestine
36 chr1:172796200-172796400 Active TSS Duodenum Smooth Muscle Duodenum
37 chr1:172796200-172796800 Enhancers Rectal Smooth Muscle rectum
38 chr1:172796200-172797000 Enhancers NHDF-Ad bronchial

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Last update: Aug 31, 2015