The 2.0 version of rSNPBase

Variant report

Variant rs10912477
Chromosome Location chr1:172795995-172795996
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172788800-172797000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:172789000-172796600 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr1:172789000-172797000 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr1:172791200-172806200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr1:172794800-172796000 Enhancers HSMM muscle
6 chr1:172795000-172796200 Enhancers Fetal Intestine Small intestine
7 chr1:172795000-172797200 Enhancers Dnd41 blood
8 chr1:172795200-172796000 Enhancers Primary monocytes fromperipheralblood blood
9 chr1:172795200-172796000 Enhancers Primary B cells from peripheral blood blood
10 chr1:172795200-172796000 Active TSS Stomach Smooth Muscle stomach
11 chr1:172795200-172796200 Enhancers Colon Smooth Muscle Colon
12 chr1:172795200-172796600 Enhancers Primary hematopoietic stem cells blood
13 chr1:172795200-172797400 Enhancers Primary T helper cells fromperipheralblood blood
14 chr1:172795200-172797600 Enhancers Primary T helper cells PMA-I stimulated --
15 chr1:172795200-172797800 Enhancers Primary T helper 17 cells PMA-I stimulated --
16 chr1:172795400-172796000 Enhancers ES-I3 Cell Line embryonic stem cell
17 chr1:172795400-172796000 Enhancers HUES6 Cell Line embryonic stem cell
18 chr1:172795400-172796000 Enhancers iPS-18 Cell Line embryonic stem cell
19 chr1:172795400-172796000 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr1:172795400-172796000 Enhancers Primary T killer naive cells fromperipheralblood blood
21 chr1:172795400-172796000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr1:172795400-172796000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr1:172795400-172796000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr1:172795400-172796000 Flanking Active TSS Adipose Nuclei Adipose
25 chr1:172795400-172796000 Active TSS Brain Inferior Temporal Lobe brain
26 chr1:172795400-172796000 Enhancers Colonic Mucosa Colon
27 chr1:172795400-172796000 Flanking Active TSS Duodenum Mucosa Duodenum
28 chr1:172795400-172796000 Enhancers Fetal Intestine Large intestine
29 chr1:172795400-172796000 Active TSS Pancreatic Islets Pancreatic Islet
30 chr1:172795400-172796000 Flanking Active TSS Fetal Lung lung
31 chr1:172795400-172796000 Enhancers Fetal Thymus thymus
32 chr1:172795400-172796000 Flanking Active TSS Rectal Mucosa Donor 31 rectum
33 chr1:172795400-172796000 Active TSS Right Atrium heart
34 chr1:172795400-172796000 Enhancers Sigmoid Colon Sigmoid Colon
35 chr1:172795400-172796000 Enhancers Hela-S3 cervix
36 chr1:172795400-172796000 Enhancers HMEC breast
37 chr1:172795400-172796000 Enhancers HSMMtube muscle
38 chr1:172795400-172796000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
39 chr1:172795400-172796000 Enhancers NH-A brain
40 chr1:172795400-172796000 Enhancers NHEK skin
41 chr1:172795400-172796000 Flanking Active TSS NHLF lung
42 chr1:172795400-172796200 Flanking Active TSS Rectal Smooth Muscle rectum
43 chr1:172795400-172796200 Enhancers HUVEC blood vessel
44 chr1:172795400-172796200 Flanking Active TSS NHDF-Ad bronchial
45 chr1:172795400-172796400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr1:172795400-172796400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
47 chr1:172795400-172796600 Enhancers Placenta Amnion Placenta Amnion
48 chr1:172795400-172797800 Enhancers Primary T helper naive cells from peripheral blood blood
49 chr1:172795400-172797800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
50 chr1:172795400-172798200 Enhancers Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015