Variant report

Variant	rs6703999
Chromosome Location	chr1:172735494-172735495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172715998..172717746-chr1:172735293..172737277,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229785	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10127707	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10912476	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11810332	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11810687	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12141975	1.00[ASN][1000 genomes]
rs12749912	1.00[ASN][1000 genomes]
rs12760127	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17279900	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2023623	0.85[EUR][1000 genomes]
rs2077690	0.91[CHD][hapmap]
rs2131375	0.91[CHD][hapmap]
rs35319454	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36060149	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61810478	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672031	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6686744	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs704841	0.91[CHD][hapmap]
rs704846	0.86[EUR][1000 genomes]
rs733684	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859625	0.92[EUR][1000 genomes]
rs859626	0.86[EUR][1000 genomes]
rs859627	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs859630	0.84[EUR][1000 genomes]
rs859723	0.91[CHD][hapmap]
rs859724	0.91[CHD][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6703999	SELE	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172733000-172736200	Enhancers	Primary B cells from peripheral blood	blood
2	chr1:172733200-172736000	Enhancers	Primary B cells from cord blood	blood
3	chr1:172734000-172738800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:172734000-172739000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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