The 2.0 version of rSNPBase

Variant report

Variant rs12749912
Chromosome Location chr1:172790953-172790954
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172787400-172793800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
2 chr1:172787600-172793800 Enhancers NHDF-Ad bronchial
3 chr1:172787800-172791200 Enhancers Osteobl bone
4 chr1:172788400-172793600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
5 chr1:172788400-172795400 Weak transcription HUES48 Cell Line embryonic stem cell
6 chr1:172788800-172797000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr1:172789000-172791400 Enhancers Muscle Satellite Cultured Cells --
8 chr1:172789000-172792400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:172789000-172795400 Weak transcription Duodenum Mucosa Duodenum
10 chr1:172789000-172795400 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr1:172789000-172795400 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr1:172789000-172796600 Weak transcription Primary T killer memory cells from peripheral blood blood
13 chr1:172789000-172797000 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr1:172789400-172791000 Enhancers HSMMtube muscle
15 chr1:172789400-172792600 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr1:172789400-172793800 Enhancers HSMM muscle
17 chr1:172789400-172795400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
18 chr1:172789600-172791000 Enhancers GM12878-XiMat blood
19 chr1:172789600-172793800 Enhancers NHLF lung
20 chr1:172790000-172795200 Weak transcription Primary B cells from peripheral blood blood
21 chr1:172790200-172791400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:172790200-172791400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr1:172790200-172793800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr1:172790200-172794200 Enhancers Primary hematopoietic stem cells short term culture blood
25 chr1:172790200-172794400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr1:172790400-172791200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr1:172790400-172791400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr1:172790400-172791400 Enhancers Adipose Nuclei Adipose
29 chr1:172790400-172791400 Enhancers Placenta Amnion Placenta Amnion
30 chr1:172790400-172791800 Enhancers Primary hematopoietic stem cells blood
31 chr1:172790400-172792000 Enhancers K562 blood
32 chr1:172790400-172794000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr1:172790600-172791000 Enhancers Monocytes-CD14+_RO01746 blood
34 chr1:172790600-172791200 Enhancers Primary monocytes fromperipheralblood blood
35 chr1:172790600-172791200 Enhancers Fetal Lung lung
36 chr1:172790600-172791400 Enhancers Brain Hippocampus Middle brain
37 chr1:172790600-172795200 Weak transcription Primary B cells from cord blood blood
38 chr1:172790800-172791000 Enhancers Lung lung
39 chr1:172790800-172791200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr1:172790800-172792000 Enhancers Dnd41 blood
41 chr1:172790800-172795400 Weak transcription A549 lung

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Last update: Aug 31, 2015