Variant report

Variant	rs1476423
Chromosome Location	chr1:172744934-172744935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr1:172744826-172745017	MCF10A-Er-Src	breast:	n/a	chr1:172744939-172744950

Variant related genes	Relation type
ENSG00000224228	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10127707	1.00[ASN][1000 genomes]
rs10912476	0.93[ASN][1000 genomes]
rs11589360	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11810332	1.00[ASN][1000 genomes]
rs11810529	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11810687	1.00[ASN][1000 genomes]
rs12141975	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12749912	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12760127	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12760147	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1492905	0.81[EUR][1000 genomes]
rs17279900	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17370938	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2022168	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2077690	0.91[CHD][hapmap]
rs2131375	0.91[CHD][hapmap]
rs35319454	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36060149	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56298311	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61810478	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672031	0.93[ASN][1000 genomes]
rs6686744	1.00[ASN][1000 genomes]
rs6703999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs704841	0.91[CHD][hapmap]
rs733684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859625	0.83[EUR][1000 genomes]
rs859723	0.91[CHD][hapmap]
rs859724	0.91[CHD][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172742600-172747000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172743200-172745000	Weak transcription	HSMM	muscle
3	chr1:172743800-172745200	Enhancers	NHDF-Ad	bronchial
4	chr1:172744600-172745200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:172744600-172746000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:172744800-172745200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:172744800-172745200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:172744800-172745600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:172744800-172745800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:172744800-172745800	Enhancers	Fetal Lung	lung

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