Variant report

Variant	rs859625
Chromosome Location	chr1:172730214-172730215
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11587368	0.81[CHD][hapmap]
rs11589360	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11810529	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12089435	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12760127	0.83[EUR][1000 genomes]
rs12760147	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1476423	0.89[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1492905	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17279900	0.92[EUR][1000 genomes]
rs17370938	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2022168	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2023623	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56298311	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6703999	0.89[CEU][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs704846	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs733684	0.89[CEU][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs859626	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs859627	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs859630	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172729400-172732000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:172729600-172730600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:172730200-172731800	Enhancers	HUVEC	blood vessel
4	chr1:172730200-172732000	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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