Variant report

Variant	rs859721
Chromosome Location	chr1:172745316-172745317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10449225	0.90[ASN][1000 genomes]
rs10912474	0.90[ASN][1000 genomes]
rs10912477	0.85[ASN][1000 genomes]
rs1102721	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1102723	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1102724	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1102725	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1102726	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1102727	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1102728	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1102730	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1492904	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2077690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2131374	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2131375	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2639634	0.85[AMR][1000 genomes]
rs2639636	0.84[AMR][1000 genomes]
rs4916195	0.85[ASN][1000 genomes]
rs4916280	0.85[ASN][1000 genomes]
rs6662628	0.85[ASN][1000 genomes]
rs6684651	0.85[ASN][1000 genomes]
rs6684969	0.81[ASN][1000 genomes]
rs6684988	0.85[ASN][1000 genomes]
rs6700605	0.90[ASN][1000 genomes]
rs704841	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs7533095	0.85[ASN][1000 genomes]
rs7547813	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7548472	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859715	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859724	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs859731	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859732	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859733	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859734	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs859735	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859736	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs860922	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs865962	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916366	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs859721	RP1-15D23.2	cis	lung	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172742600-172747000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172744600-172746000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:172744800-172745600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:172744800-172745800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:172744800-172745800	Enhancers	Fetal Lung	lung
6	chr1:172745000-172745600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:172745000-172745800	Enhancers	HSMM	muscle
8	chr1:172745200-172745600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:172745200-172745600	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr1:172745200-172745600	Active TSS	NHDF-Ad	bronchial
11	chr1:172745200-172745600	Enhancers	NHEK	skin
12	chr1:172745200-172745600	Enhancers	NHLF	lung
13	chr1:172745200-172745800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:172745200-172747400	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links