Variant report

Variant	rs1501862
Chromosome Location	chr13:97657200-97657201
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10467218	0.83[AMR][1000 genomes]
rs16953709	1.00[GIH][hapmap]
rs16953867	1.00[GIH][hapmap]
rs57332857	0.83[AMR][1000 genomes]
rs61528018	0.83[AMR][1000 genomes]
rs7323624	0.83[AMR][1000 genomes]
rs7323749	0.83[AMR][1000 genomes]
rs7324215	0.83[AMR][1000 genomes]
rs7329047	0.83[AMR][1000 genomes]
rs74107003	1.00[AMR][1000 genomes]
rs74107008	1.00[AMR][1000 genomes]
rs74107009	1.00[AMR][1000 genomes]
rs74107011	1.00[AMR][1000 genomes]
rs7992251	0.83[AMR][1000 genomes]
rs9584466	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97650400-97657400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:97654600-97658400	Enhancers	NH-A	brain
3	chr13:97654800-97658600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:97655000-97657200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr13:97655400-97660400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr13:97656000-97658600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:97656400-97658400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr13:97656400-97658600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:97656400-97658600	Enhancers	NHDF-Ad	bronchial
10	chr13:97656400-97658600	Enhancers	NHLF	lung
11	chr13:97656600-97657200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:97656600-97658000	Enhancers	Fetal Heart	heart
13	chr13:97656600-97658600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr13:97656600-97658600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:97656600-97658600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr13:97656600-97658600	Enhancers	Placenta	Placenta
17	chr13:97656800-97657400	Enhancers	HSMM	muscle
18	chr13:97656800-97658000	Weak transcription	NHEK	skin
19	chr13:97656800-97658600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr13:97657000-97657200	Enhancers	HMEC	breast
21	chr13:97657000-97658600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr13:97657200-97657600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr13:97657200-97657600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr13:97657200-97657800	Weak transcription	HMEC	breast
25	chr13:97657200-97658000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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