Variant report

Variant	rs7323749
Chromosome Location	chr13:97646094-97646095
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10467218	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1501860	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1501862	0.83[AMR][1000 genomes]
rs16953709	1.00[GIH][hapmap];0.82[LWK][hapmap];0.85[MKK][hapmap]
rs16953867	1.00[GIH][hapmap]
rs61528018	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7323624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7324215	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7328024	0.85[AMR][1000 genomes]
rs7329047	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73550844	0.85[AMR][1000 genomes]
rs74107003	0.83[AMR][1000 genomes]
rs74107008	0.83[AMR][1000 genomes]
rs74107009	0.83[AMR][1000 genomes]
rs74107011	0.83[AMR][1000 genomes]
rs7983514	0.85[AMR][1000 genomes]
rs7986614	0.85[AMR][1000 genomes]
rs7987624	0.85[AMR][1000 genomes]
rs9300383	0.85[AMR][1000 genomes]
rs9584466	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97636600-97646200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:97645400-97646200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:97645400-97646200	Active TSS	Colonic Mucosa	Colon
4	chr13:97645400-97646200	Weak transcription	Gastric	stomach
5	chr13:97645600-97646200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
6	chr13:97645600-97646200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:97645600-97647200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr13:97645800-97646200	Active TSS	Rectal Smooth Muscle	rectum
9	chr13:97645800-97646400	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
10	chr13:97645800-97646600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr13:97645800-97646600	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr13:97645800-97647000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
13	chr13:97645800-97647000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
14	chr13:97645800-97647000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
15	chr13:97645800-97647000	Active TSS	Fetal Kidney	kidney
16	chr13:97645800-97647000	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr13:97645800-97647000	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr13:97645800-97647000	Bivalent/Poised TSS	NHDF-Ad	bronchial
19	chr13:97645800-97647200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr13:97645800-97647200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr13:97645800-97647200	Active TSS	Fetal Brain Female	brain
22	chr13:97645800-97647200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
23	chr13:97645800-97647400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
24	chr13:97645800-97647400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
25	chr13:97645800-97647400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr13:97646000-97646200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr13:97646000-97646200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr13:97646000-97646200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
29	chr13:97646000-97646200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
30	chr13:97646000-97646200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr13:97646000-97646200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr13:97646000-97646200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr13:97646000-97646200	Flanking Active TSS	Brain Cingulate Gyrus	brain
34	chr13:97646000-97646200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
35	chr13:97646000-97646200	Flanking Active TSS	Brain Substantia Nigra	brain
36	chr13:97646000-97646200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
37	chr13:97646000-97646200	Bivalent/Poised TSS	Fetal Lung	lung
38	chr13:97646000-97646200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
39	chr13:97646000-97646200	Enhancers	Pancreas	Pancrea
40	chr13:97646000-97646200	Enhancers	Right Atrium	heart
41	chr13:97646000-97646200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
42	chr13:97646000-97646200	Active TSS	Spleen	Spleen
43	chr13:97646000-97646400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr13:97646000-97646400	Flanking Active TSS	Duodenum Mucosa	Duodenum
45	chr13:97646000-97646400	Flanking Active TSS	Fetal Brain Male	brain
46	chr13:97646000-97646400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
47	chr13:97646000-97646400	Bivalent/Poised TSS	Psoas Muscle	Psoas
48	chr13:97646000-97646400	Active TSS	Right Ventricle	heart
49	chr13:97646000-97646400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
50	chr13:97646000-97646600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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