Variant report

Variant	rs73550844
Chromosome Location	chr13:97677854-97677855
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10467218	0.85[AMR][1000 genomes]
rs1999833	0.87[AMR][1000 genomes]
rs57332857	0.85[AMR][1000 genomes]
rs61528018	0.85[AMR][1000 genomes]
rs7323624	0.85[AMR][1000 genomes]
rs7323749	0.85[AMR][1000 genomes]
rs7324215	0.85[AMR][1000 genomes]
rs7328024	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7329047	0.85[AMR][1000 genomes]
rs7983514	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7986614	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7987624	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7992251	0.85[AMR][1000 genomes]
rs9300383	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584466	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97670800-97678200	Weak transcription	Adipose Nuclei	Adipose
2	chr13:97671000-97678200	Weak transcription	Fetal Brain Male	brain
3	chr13:97673800-97678400	Weak transcription	HUVEC	blood vessel
4	chr13:97675600-97678000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:97676600-97679000	Weak transcription	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links