Variant report

Variant	rs7324215
Chromosome Location	chr13:97654743-97654744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10467218	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1501860	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1501862	0.83[AMR][1000 genomes]
rs55748147	0.87[AFR][1000 genomes]
rs61528018	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7323624	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7323749	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7328024	0.85[AMR][1000 genomes]
rs7329047	1.00[AMR][1000 genomes]
rs73550844	0.85[AMR][1000 genomes]
rs74107003	0.83[AMR][1000 genomes]
rs74107008	0.83[AMR][1000 genomes]
rs74107009	0.83[AMR][1000 genomes]
rs74107011	0.83[AMR][1000 genomes]
rs7983514	0.85[AMR][1000 genomes]
rs7986614	0.85[AMR][1000 genomes]
rs7987624	0.85[AMR][1000 genomes]
rs9300383	0.85[AMR][1000 genomes]
rs9584466	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97650400-97657400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:97652600-97654800	Enhancers	Primary B cells from cord blood	blood
3	chr13:97653000-97656400	Weak transcription	NHDF-Ad	bronchial
4	chr13:97653400-97656600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:97653600-97656000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:97653600-97656600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:97654000-97655000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr13:97654000-97655400	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr13:97654600-97655000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr13:97654600-97658400	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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