Variant report

Variant	rs7329047
Chromosome Location	chr13:97646503-97646504
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10467218	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1501860	0.85[AMR][1000 genomes]
rs1501862	0.83[AMR][1000 genomes]
rs61528018	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7323624	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7323749	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7324215	1.00[AMR][1000 genomes]
rs7328024	0.85[AMR][1000 genomes]
rs73550844	0.85[AMR][1000 genomes]
rs74107003	0.83[AMR][1000 genomes]
rs74107008	0.83[AMR][1000 genomes]
rs74107009	0.83[AMR][1000 genomes]
rs74107011	0.83[AMR][1000 genomes]
rs7983514	0.85[AMR][1000 genomes]
rs7986614	0.85[AMR][1000 genomes]
rs7987624	0.85[AMR][1000 genomes]
rs9300383	0.85[AMR][1000 genomes]
rs9584466	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97645600-97647200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr13:97645800-97646600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:97645800-97646600	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr13:97645800-97647000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
5	chr13:97645800-97647000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr13:97645800-97647000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr13:97645800-97647000	Active TSS	Fetal Kidney	kidney
8	chr13:97645800-97647000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr13:97645800-97647000	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr13:97645800-97647000	Bivalent/Poised TSS	NHDF-Ad	bronchial
11	chr13:97645800-97647200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr13:97645800-97647200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:97645800-97647200	Active TSS	Fetal Brain Female	brain
14	chr13:97645800-97647200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
15	chr13:97645800-97647400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr13:97645800-97647400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
17	chr13:97645800-97647400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr13:97646000-97646600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
19	chr13:97646000-97646600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr13:97646000-97646600	Bivalent Enhancer	Liver	Liver
21	chr13:97646000-97646600	Active TSS	Colon Smooth Muscle	Colon
22	chr13:97646000-97646600	Flanking Bivalent TSS/Enh	Placenta	Placenta
23	chr13:97646000-97646600	Bivalent/Poised TSS	HSMM	muscle
24	chr13:97646000-97646600	Flanking Bivalent TSS/Enh	NHEK	skin
25	chr13:97646000-97646800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr13:97646000-97646800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr13:97646000-97646800	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr13:97646000-97646800	Bivalent Enhancer	Primary B cells from cord blood	blood
29	chr13:97646000-97646800	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
30	chr13:97646000-97646800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
31	chr13:97646000-97646800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
32	chr13:97646000-97646800	Enhancers	Lung	lung
33	chr13:97646000-97647000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr13:97646000-97647000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
35	chr13:97646000-97647000	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
36	chr13:97646000-97647000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr13:97646000-97647000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr13:97646000-97647000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
39	chr13:97646000-97647000	Active TSS	Brain Anterior Caudate	brain
40	chr13:97646000-97647000	Active TSS	Brain Inferior Temporal Lobe	brain
41	chr13:97646000-97647000	Active TSS	Esophagus	oesophagus
42	chr13:97646000-97647000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
43	chr13:97646000-97647000	Active TSS	K562	blood
44	chr13:97646000-97647000	Bivalent/Poised TSS	NHLF	lung
45	chr13:97646000-97647200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
46	chr13:97646000-97647200	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr13:97646000-97647200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr13:97646000-97647200	Active TSS	Brain Angular Gyrus	brain
49	chr13:97646000-97647200	Active TSS	Brain Hippocampus Middle	brain
50	chr13:97646000-97647200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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