Variant report

Variant	rs1507886
Chromosome Location	chr8:88761802-88761803
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:88752001..88754722-chr8:88761392..88764098,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10087017	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10093384	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10108266	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10216678	0.84[EUR][1000 genomes]
rs1178633	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11988321	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12675590	0.81[ASN][1000 genomes]
rs13251761	0.81[ASN][1000 genomes]
rs13258223	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13439375	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2097943	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28671371	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35930334	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55767621	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57990946	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6415440	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6468952	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6468958	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6468959	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6468998	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6984446	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6989732	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6993181	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7009384	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72670869	0.81[ASN][1000 genomes]
rs72670871	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72673112	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72673115	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673119	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72673131	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72673132	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7460446	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7465240	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7813231	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7825236	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7826025	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7827917	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844301	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9643015	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891167	chr8:88600593-88846956	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831384	chr8:88746718-88917248	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:88760000-88763000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr8:88760000-88766200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:88760000-88768000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:88760000-88770600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links