Variant report

Variant	rs9643015
Chromosome Location	chr8:88712015-88712016
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10087017	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10092628	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs10093384	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10108266	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10216678	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11778533	0.85[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap]
rs1178633	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11988321	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12675263	0.84[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs12675590	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12677635	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs13251761	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13258223	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13439375	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1507886	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2097943	0.84[ASN][1000 genomes]
rs28671371	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35930334	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4501594	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55767621	0.82[ASN][1000 genomes]
rs55927720	0.82[ASN][1000 genomes]
rs56280774	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57990946	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6415440	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6468952	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6468958	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6468959	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6468998	0.95[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6984446	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6989732	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6993181	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7009384	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72670865	0.82[ASN][1000 genomes]
rs72670869	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72670871	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72673112	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72673115	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72673119	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72673131	0.84[ASN][1000 genomes]
rs72673132	0.85[ASN][1000 genomes]
rs7460446	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7465240	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7813231	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7825236	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7826025	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7827917	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7828921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7844301	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020699	chr8:87880120-88734779	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv539663	chr8:87880120-88734779	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891167	chr8:88600593-88846956	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:88701000-88712400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:88710800-88712600	Enhancers	HMEC	breast
3	chr8:88711400-88712800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:88711600-88712600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr8:88711600-88713200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:88711800-88712800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:88711800-88712800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:88711800-88713000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr8:88712000-88712800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr8:88712000-88713000	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links