Variant report

Variant	rs7827917
Chromosome Location	chr8:88759706-88759707
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10087017	0.81[ASN][1000 genomes]
rs10092628	0.84[CEU][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.80[TSI][hapmap]
rs10093384	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10108266	0.81[ASN][1000 genomes]
rs11778533	0.84[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1178633	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11988321	0.81[ASN][1000 genomes]
rs12675263	0.83[CEU][hapmap];0.86[JPT][hapmap]
rs12675590	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12677635	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap]
rs13251761	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13258223	0.81[ASN][1000 genomes]
rs13439375	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1507886	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2097943	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28671371	0.81[ASN][1000 genomes]
rs35930334	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55767621	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57990946	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6415440	0.81[ASN][1000 genomes]
rs6468952	0.81[ASN][1000 genomes]
rs6468958	0.81[ASN][1000 genomes]
rs6468959	0.81[ASN][1000 genomes]
rs6468998	0.94[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6984446	0.81[ASN][1000 genomes]
rs6989732	0.81[ASN][1000 genomes]
rs6993181	0.81[ASN][1000 genomes]
rs7009384	0.81[ASN][1000 genomes]
rs72670869	0.81[ASN][1000 genomes]
rs72670871	0.81[ASN][1000 genomes]
rs72673112	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72673115	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673119	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72673131	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72673132	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7460446	0.81[ASN][1000 genomes]
rs7465240	0.80[ASN][1000 genomes]
rs7813231	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7825236	0.81[ASN][1000 genomes]
rs7826025	0.81[ASN][1000 genomes]
rs7828921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap]
rs7844301	0.82[ASN][1000 genomes]
rs9643015	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891167	chr8:88600593-88846956	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831384	chr8:88746718-88917248	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv968516	chr8:88754170-88760731	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7827917	C8orf59	cis	parietal	SCAN
rs7827917	CA2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:88759600-88760200	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr8:88759600-88761200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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