Variant report

Variant	rs6468998
Chromosome Location	chr8:88741058-88741059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:88738222..88741116-chr8:88744719..88747322,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253500	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10087017	0.82[ASN][1000 genomes]
rs10093384	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10108266	0.82[ASN][1000 genomes]
rs11778533	0.80[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs1178633	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11988321	0.82[ASN][1000 genomes]
rs12675590	0.95[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs12677635	0.94[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap]
rs13251761	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13258223	0.82[ASN][1000 genomes]
rs13439375	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1507886	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2097943	0.86[ASN][1000 genomes]
rs28671371	0.82[ASN][1000 genomes]
rs35930334	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4501594	0.81[ASN][1000 genomes]
rs55767621	0.84[ASN][1000 genomes]
rs55927720	0.81[ASN][1000 genomes]
rs57990946	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6415440	0.82[ASN][1000 genomes]
rs6468952	0.82[ASN][1000 genomes]
rs6468958	0.82[ASN][1000 genomes]
rs6468959	0.82[ASN][1000 genomes]
rs6984446	0.82[ASN][1000 genomes]
rs6989732	0.82[ASN][1000 genomes]
rs6993181	0.82[ASN][1000 genomes]
rs7009384	0.82[ASN][1000 genomes]
rs72670865	0.81[ASN][1000 genomes]
rs72670869	0.82[ASN][1000 genomes]
rs72670871	0.81[ASN][1000 genomes]
rs72673112	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72673115	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72673119	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72673131	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72673132	0.86[ASN][1000 genomes]
rs7460446	0.82[ASN][1000 genomes]
rs7465240	0.81[ASN][1000 genomes]
rs7813231	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7825236	0.81[ASN][1000 genomes]
rs7826025	0.82[ASN][1000 genomes]
rs7827917	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7828921	0.94[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs7844301	0.82[ASN][1000 genomes]
rs9643015	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891167	chr8:88600593-88846956	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links