Variant report

Variant	rs72673112
Chromosome Location	chr8:88760576-88760577
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10087017	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10093384	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10108266	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10216678	0.84[EUR][1000 genomes]
rs1178633	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11988321	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12675590	0.82[ASN][1000 genomes]
rs13251761	0.82[ASN][1000 genomes]
rs13258223	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13439375	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1507886	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2097943	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28671371	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35930334	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4501594	0.81[ASN][1000 genomes]
rs55767621	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs55927720	0.81[ASN][1000 genomes]
rs57990946	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6415440	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6468952	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6468958	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6468959	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6468998	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6984446	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6989732	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6993181	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7009384	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72670865	0.81[ASN][1000 genomes]
rs72670869	0.82[ASN][1000 genomes]
rs72670871	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72673115	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72673119	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673131	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72673132	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7460446	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7465240	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7813231	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7825236	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7826025	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7827917	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7844301	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9643015	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891167	chr8:88600593-88846956	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831384	chr8:88746718-88917248	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv968516	chr8:88754170-88760731	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:88759600-88761200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr8:88759800-88760600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:88759800-88760800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:88760000-88763000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr8:88760000-88766200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:88760000-88768000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:88760000-88770600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:88760200-88760600	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr8:88760200-88760800	Enhancers	HUES64 Cell Line	embryonic stem cell

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