Variant report

Variant	rs1520697
Chromosome Location	chr3:159295114-159295115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12108170	1.00[CEU][hapmap];0.97[GIH][hapmap];0.96[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16830461	0.91[EUR][1000 genomes]
rs6441266	1.00[CEU][hapmap];0.97[GIH][hapmap];0.92[TSI][hapmap]
rs9822068	1.00[CEU][hapmap];0.97[GIH][hapmap];0.96[TSI][hapmap]
rs9822792	1.00[CEU][hapmap]
rs9827448	0.82[GIH][hapmap]
rs9839862	0.80[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs9845981	0.89[CHB][hapmap]
rs9851835	0.82[GIH][hapmap]
rs9883342	0.80[CEU][hapmap];0.95[CHB][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	esv3692798	chr3:159269142-159302556	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv522248	chr3:159295114-159298036	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159295000-159295400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:159295000-159295400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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