Variant report

Variant	rs9851835
Chromosome Location	chr3:159357602-159357603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12108170	0.82[GIH][hapmap]
rs1520697	0.82[GIH][hapmap]
rs9827448	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9839862	0.89[CEU][hapmap];0.88[GIH][hapmap]
rs9845981	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs9883342	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159350600-159358200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:159353000-159358000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:159353200-159358000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:159353200-159358000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:159353200-159358000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:159353200-159358200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:159356200-159363200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:159356400-159379800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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