Variant report

Variant	rs9827448
Chromosome Location	chr3:159351238-159351239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12108170	0.82[GIH][hapmap]
rs1520697	0.82[GIH][hapmap]
rs9839862	0.89[CEU][hapmap];0.88[GIH][hapmap]
rs9845981	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs9851835	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9883342	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159346000-159352800	Weak transcription	Fetal Heart	heart
2	chr3:159347400-159352400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:159347600-159352400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:159347800-159351600	Weak transcription	NHLF	lung
5	chr3:159347800-159352000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:159347800-159352200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:159347800-159352200	Weak transcription	Osteobl	bone
8	chr3:159348000-159352200	Weak transcription	NHDF-Ad	bronchial
9	chr3:159349600-159353000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:159349800-159351800	Enhancers	A549	lung
11	chr3:159349800-159352600	Weak transcription	Gastric	stomach
12	chr3:159350000-159353200	Enhancers	Hela-S3	cervix
13	chr3:159350200-159351600	Enhancers	NHEK	skin
14	chr3:159350200-159352200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:159350400-159351800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:159350600-159352200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:159350600-159352800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:159350600-159358200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:159350800-159351800	Weak transcription	NH-A	brain
20	chr3:159350800-159352200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:159350800-159352200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr3:159350800-159353200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:159351000-159352200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr3:159351000-159352400	Weak transcription	HSMMtube	muscle
25	chr3:159351200-159352200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:159351200-159352200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:159351200-159352200	Weak transcription	HMEC	breast
28	chr3:159351200-159352200	Weak transcription	HSMM	muscle
29	chr3:159351200-159352400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:159351200-159352400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr3:159351200-159352400	Weak transcription	Fetal Intestine Large	intestine

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