Variant report

Variant	rs9839862
Chromosome Location	chr3:159276226-159276227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12108170	0.80[CEU][hapmap];0.91[GIH][hapmap];0.87[TSI][hapmap]
rs1520697	0.80[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6441266	0.80[CEU][hapmap];0.91[GIH][hapmap];0.83[TSI][hapmap]
rs9822068	0.80[CEU][hapmap];0.91[GIH][hapmap];0.87[TSI][hapmap]
rs9822792	0.80[CEU][hapmap]
rs9827448	0.89[CEU][hapmap];0.88[GIH][hapmap]
rs9845981	0.89[CEU][hapmap];0.89[CHB][hapmap]
rs9851835	0.89[CEU][hapmap];0.88[GIH][hapmap]
rs9883342	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	esv3692798	chr3:159269142-159302556	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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