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Variant report
Variant
rs9845981
Chromosome Location
chr3:159305000-159305001
allele
C/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:3)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:3 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr3:159039956..159040769-chr3:159304062..159305002,3
MCF-7
breast:
2
chr3:158981261..158982254-chr3:159304162..159305156,6
MCF-7
breast:
3
chr3:158984325..158985283-chr3:159303605..159305136,6
MCF-7
breast:
No data
No data
No data
No data
Extended variants information (count: 6 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:5)
rs_ID
r
2
[population]
rs1520697
0.89[CHB][hapmap];0.87[ASN][1000 genomes]
rs9827448
1.00[CEU][hapmap];0.81[JPT][hapmap]
rs9839862
0.89[CEU][hapmap];0.89[CHB][hapmap]
rs9851835
1.00[CEU][hapmap];0.81[JPT][hapmap]
rs9883342
0.89[CEU][hapmap];0.85[CHB][hapmap]
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv998949
chr3:158774806-159394550
Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA
4 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links