Variant report

Variant	rs1522630
Chromosome Location	chr7:112452979-112452980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1017598	1.00[AMR][1000 genomes]
rs1017599	1.00[AMR][1000 genomes]
rs10231221	1.00[ASW][hapmap];0.90[YRI][hapmap]
rs10267651	1.00[AMR][1000 genomes]
rs1037299	1.00[AMR][1000 genomes]
rs1227156	1.00[AMR][1000 genomes]
rs1227157	1.00[AMR][1000 genomes]
rs1227160	1.00[AMR][1000 genomes]
rs1227161	1.00[AMR][1000 genomes]
rs1227162	1.00[AMR][1000 genomes]
rs1227165	1.00[AMR][1000 genomes]
rs1227166	1.00[AMR][1000 genomes]
rs1227167	1.00[AMR][1000 genomes]
rs1227169	1.00[AMR][1000 genomes]
rs1227170	1.00[AMR][1000 genomes]
rs1227173	1.00[AMR][1000 genomes]
rs1227180	1.00[AMR][1000 genomes]
rs1227186	1.00[AMR][1000 genomes]
rs1227191	1.00[AMR][1000 genomes]
rs1234894	1.00[AMR][1000 genomes]
rs1237908	1.00[AMR][1000 genomes]
rs1375856	1.00[AMR][1000 genomes]
rs1449950	1.00[AMR][1000 genomes]
rs1449952	1.00[AMR][1000 genomes]
rs1620709	1.00[AMR][1000 genomes]
rs1718933	1.00[AMR][1000 genomes]
rs1718942	1.00[AMR][1000 genomes]
rs1718943	1.00[AMR][1000 genomes]
rs1718953	1.00[AMR][1000 genomes]
rs1718954	0.82[YRI][hapmap]
rs1718962	1.00[AMR][1000 genomes]
rs1796496	1.00[AMR][1000 genomes]
rs1796515	1.00[AMR][1000 genomes]
rs1830470	1.00[AMR][1000 genomes]
rs1830471	1.00[AMR][1000 genomes]
rs1868586	1.00[AMR][1000 genomes]
rs1975625	0.82[AFR][1000 genomes]
rs1976990	1.00[AMR][1000 genomes]
rs2103040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2197953	1.00[ASW][hapmap];0.93[LWK][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2396584	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2396585	1.00[AMR][1000 genomes]
rs2396587	1.00[AMR][1000 genomes]
rs2687263	1.00[AMR][1000 genomes]
rs2687265	1.00[AMR][1000 genomes]
rs2687268	1.00[AMR][1000 genomes]
rs2687271	1.00[AMR][1000 genomes]
rs2708294	1.00[AMR][1000 genomes]
rs2894660	1.00[AMR][1000 genomes]
rs4336532	1.00[AMR][1000 genomes]
rs4727777	1.00[AMR][1000 genomes]
rs501621	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs551461	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59930732	1.00[AMR][1000 genomes]
rs61390562	1.00[AMR][1000 genomes]
rs622763	0.87[AFR][1000 genomes]
rs637075	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466425	1.00[AMR][1000 genomes]
rs6949796	1.00[AMR][1000 genomes]
rs6950289	1.00[AMR][1000 genomes]
rs7776679	1.00[AMR][1000 genomes]
rs7790704	1.00[AMR][1000 genomes]
rs7790946	1.00[AMR][1000 genomes]
rs7799048	1.00[AMR][1000 genomes]
rs821784	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs821786	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs821788	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv2752144	chr7:112398372-112499924	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv1794529	chr7:112400060-112588376	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1031405	chr7:112431403-112476756	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv429801	chr7:112434049-112477049	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	esv2752145	chr7:112434049-112500049	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv1023222	chr7:112434413-112476756	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
8	nsv1034863	chr7:112434413-112504160	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv5905	chr7:112445425-112521797	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112442800-112472800	Weak transcription	Lung	lung
2	chr7:112450000-112453000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:112451200-112469200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:112452800-112453000	Enhancers	H9 Cell Line	embryonic stem cell

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