Variant report

Variant	rs1868586
Chromosome Location	chr7:112636219-112636220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1017598	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1017599	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10267651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1037299	1.00[AMR][1000 genomes]
rs1227166	1.00[AMR][1000 genomes]
rs1227167	1.00[AMR][1000 genomes]
rs1227169	1.00[AMR][1000 genomes]
rs1227170	1.00[AMR][1000 genomes]
rs1227173	1.00[AMR][1000 genomes]
rs1227186	1.00[AMR][1000 genomes]
rs1234894	1.00[AMR][1000 genomes]
rs1375856	1.00[AMR][1000 genomes]
rs1449950	1.00[AMR][1000 genomes]
rs1449952	1.00[AMR][1000 genomes]
rs1522630	1.00[AMR][1000 genomes]
rs1620709	1.00[AMR][1000 genomes]
rs1718933	1.00[AMR][1000 genomes]
rs1718942	1.00[AMR][1000 genomes]
rs1718953	1.00[AMR][1000 genomes]
rs1718962	1.00[AMR][1000 genomes]
rs1796515	1.00[AMR][1000 genomes]
rs1830470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1830471	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1976990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2103040	1.00[AMR][1000 genomes]
rs2197953	1.00[AMR][1000 genomes]
rs2396584	1.00[AMR][1000 genomes]
rs2396585	1.00[AMR][1000 genomes]
rs2396587	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2687263	1.00[AMR][1000 genomes]
rs2687268	1.00[AMR][1000 genomes]
rs2708294	1.00[AMR][1000 genomes]
rs2894660	1.00[AMR][1000 genomes]
rs4336532	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4727777	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs501621	1.00[AMR][1000 genomes]
rs551461	1.00[AMR][1000 genomes]
rs637075	1.00[AMR][1000 genomes]
rs6466425	1.00[AMR][1000 genomes]
rs6949796	1.00[AMR][1000 genomes]
rs6950289	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73715597	1.00[AMR][1000 genomes]
rs7776679	1.00[AMR][1000 genomes]
rs7790704	1.00[AMR][1000 genomes]
rs7790946	1.00[AMR][1000 genomes]
rs7799048	1.00[AMR][1000 genomes]
rs7810374	1.00[AMR][1000 genomes]
rs821784	1.00[AMR][1000 genomes]
rs821786	1.00[AMR][1000 genomes]
rs821788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758131	chr7:112492127-112768628	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759556	chr7:112492127-112768628	Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3355135	chr7:112616979-113134651	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv435847	chr7:112618576-113134022	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3430638	chr7:112620663-113134403	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv3442221	chr7:112620665-113134971	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv993501	chr7:112625029-113125338	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	esv1798097	chr7:112628373-112636408	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv1813734	chr7:112628373-112636408	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv1022066	chr7:112630168-113122748	Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv539090	chr7:112630168-113122748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1027152	chr7:112631140-112713972	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112634200-112637400	Weak transcription	Fetal Brain Male	brain
2	chr7:112635000-112636600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:112635200-112636600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr7:112635200-112636600	Flanking Active TSS	Osteobl	bone
5	chr7:112635800-112636600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:112635800-112636600	Enhancers	NH-A	brain
7	chr7:112635800-112636600	Enhancers	NHDF-Ad	bronchial
8	chr7:112635800-112636800	Enhancers	HSMMtube	muscle
9	chr7:112635800-112649000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:112636000-112636400	Enhancers	HSMM	muscle
11	chr7:112636000-112636600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:112636000-112637200	Enhancers	Fetal Heart	heart
13	chr7:112636000-112637600	Weak transcription	HMEC	breast
14	chr7:112636000-112638000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:112636200-112637000	Enhancers	Muscle Satellite Cultured Cells	--

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