Variant report

Variant	rs821786
Chromosome Location	chr7:112461638-112461639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112457341..112459401-chr7:112460833..112463216,2	K562	blood:
2	chr7:112460967..112462582-chr7:112467318..112468834,2	MCF-7	breast:

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	C7orf60	hsa-miR-186-5p	chr7:112461629-112461648

Variant related genes	Relation type
C7orf60	miRNA target site

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1017598	1.00[AMR][1000 genomes]
rs1017599	1.00[AMR][1000 genomes]
rs10267651	1.00[AMR][1000 genomes]
rs1037299	1.00[AMR][1000 genomes]
rs1227156	1.00[AMR][1000 genomes]
rs1227157	1.00[AMR][1000 genomes]
rs1227160	1.00[AMR][1000 genomes]
rs1227161	1.00[AMR][1000 genomes]
rs1227162	1.00[AMR][1000 genomes]
rs1227165	1.00[AMR][1000 genomes]
rs1227166	1.00[AMR][1000 genomes]
rs1227167	1.00[AMR][1000 genomes]
rs1227169	1.00[AMR][1000 genomes]
rs1227170	1.00[AMR][1000 genomes]
rs1227173	1.00[AMR][1000 genomes]
rs1227180	1.00[AMR][1000 genomes]
rs1227186	1.00[AMR][1000 genomes]
rs1227191	1.00[AMR][1000 genomes]
rs1234894	1.00[AMR][1000 genomes]
rs1237908	1.00[AMR][1000 genomes]
rs1375856	1.00[AMR][1000 genomes]
rs1449950	1.00[AMR][1000 genomes]
rs1449952	1.00[AMR][1000 genomes]
rs1522630	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1620709	1.00[AMR][1000 genomes]
rs1718933	1.00[AMR][1000 genomes]
rs1718942	1.00[AMR][1000 genomes]
rs1718943	1.00[AMR][1000 genomes]
rs1718953	1.00[AMR][1000 genomes]
rs1718962	1.00[AMR][1000 genomes]
rs1796496	1.00[AMR][1000 genomes]
rs1796515	1.00[AMR][1000 genomes]
rs1830470	1.00[AMR][1000 genomes]
rs1830471	1.00[AMR][1000 genomes]
rs1868586	1.00[AMR][1000 genomes]
rs1976990	1.00[AMR][1000 genomes]
rs2103040	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2197953	1.00[AMR][1000 genomes]
rs2396584	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2396585	1.00[AMR][1000 genomes]
rs2396587	1.00[AMR][1000 genomes]
rs2687263	1.00[AMR][1000 genomes]
rs2687265	1.00[AMR][1000 genomes]
rs2687268	1.00[AMR][1000 genomes]
rs2687271	1.00[AMR][1000 genomes]
rs2708294	1.00[AMR][1000 genomes]
rs2894660	1.00[AMR][1000 genomes]
rs4336532	1.00[AMR][1000 genomes]
rs4727777	1.00[AMR][1000 genomes]
rs501621	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs551461	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59930732	1.00[AMR][1000 genomes]
rs61390562	1.00[AMR][1000 genomes]
rs622763	0.85[AFR][1000 genomes]
rs637075	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466425	1.00[AMR][1000 genomes]
rs6949796	1.00[AMR][1000 genomes]
rs6950289	1.00[AMR][1000 genomes]
rs7776679	1.00[AMR][1000 genomes]
rs7790704	1.00[AMR][1000 genomes]
rs7790946	1.00[AMR][1000 genomes]
rs7799048	1.00[AMR][1000 genomes]
rs821784	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs821788	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv2752144	chr7:112398372-112499924	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv1794529	chr7:112400060-112588376	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1031405	chr7:112431403-112476756	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv429801	chr7:112434049-112477049	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	esv2752145	chr7:112434049-112500049	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv1023222	chr7:112434413-112476756	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
8	nsv1034863	chr7:112434413-112504160	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv5905	chr7:112445425-112521797	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112442800-112472800	Weak transcription	Lung	lung
2	chr7:112451200-112469200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:112454800-112463200	Weak transcription	HUVEC	blood vessel
4	chr7:112455400-112467600	Weak transcription	Primary T cells from cord blood	blood
5	chr7:112456000-112461800	Weak transcription	Fetal Intestine Large	intestine
6	chr7:112456000-112461800	Weak transcription	Left Ventricle	heart
7	chr7:112456000-112465800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:112456200-112467800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:112456200-112468600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr7:112456400-112467800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:112456400-112470000	Weak transcription	Right Ventricle	heart
12	chr7:112456600-112468000	Weak transcription	HSMMtube	muscle
13	chr7:112456600-112470200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr7:112456800-112464800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr7:112456800-112465200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:112457000-112461800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:112457000-112464400	Weak transcription	Fetal Stomach	stomach
18	chr7:112457200-112461800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:112457200-112461800	Weak transcription	Dnd41	blood
20	chr7:112457200-112461800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr7:112457200-112465200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr7:112457200-112468000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr7:112457200-112468400	Weak transcription	Fetal Brain Male	brain
24	chr7:112457200-112469600	Weak transcription	Ovary	ovary
25	chr7:112457200-112470000	Weak transcription	Fetal Thymus	thymus
26	chr7:112457400-112461800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:112457400-112468600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr7:112457600-112461800	Weak transcription	Adipose Nuclei	Adipose
29	chr7:112457600-112464400	Strong transcription	Primary B cells from cord blood	blood
30	chr7:112457600-112468400	Weak transcription	GM12878-XiMat	blood
31	chr7:112457600-112469400	Weak transcription	Brain Germinal Matrix	brain
32	chr7:112457600-112474000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr7:112457800-112461800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr7:112458000-112462000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr7:112458000-112462400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:112458000-112467800	Weak transcription	Aorta	Aorta
37	chr7:112458200-112463000	Weak transcription	Fetal Brain Female	brain
38	chr7:112458200-112467800	Weak transcription	Fetal Kidney	kidney
39	chr7:112458200-112468000	Weak transcription	Fetal Heart	heart
40	chr7:112458200-112468600	Weak transcription	NH-A	brain
41	chr7:112458200-112469600	Weak transcription	Placenta	Placenta
42	chr7:112458400-112470400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr7:112458800-112468000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr7:112458800-112469200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr7:112459400-112461800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:112459400-112468200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr7:112459400-112468200	Weak transcription	HSMM	muscle
48	chr7:112459400-112469000	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr7:112459400-112469400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr7:112459600-112461800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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