Variant report

Variant	rs6466425
Chromosome Location	chr7:112599686-112599687
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112583353..112585564-chr7:112597999..112600804,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1017598	1.00[AMR][1000 genomes]
rs1017599	1.00[AMR][1000 genomes]
rs10267651	1.00[AMR][1000 genomes]
rs1037299	1.00[AMR][1000 genomes]
rs1227156	1.00[AMR][1000 genomes]
rs1227157	1.00[AMR][1000 genomes]
rs1227160	1.00[AMR][1000 genomes]
rs1227161	1.00[AMR][1000 genomes]
rs1227162	1.00[AMR][1000 genomes]
rs1227165	1.00[AMR][1000 genomes]
rs1227166	1.00[AMR][1000 genomes]
rs1227167	1.00[AMR][1000 genomes]
rs1227169	1.00[AMR][1000 genomes]
rs1227170	1.00[AMR][1000 genomes]
rs1227173	1.00[AMR][1000 genomes]
rs1227180	1.00[AMR][1000 genomes]
rs1227186	1.00[AMR][1000 genomes]
rs1227191	1.00[AMR][1000 genomes]
rs1234894	1.00[AMR][1000 genomes]
rs1237908	1.00[AMR][1000 genomes]
rs1375856	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1449950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1449952	1.00[AMR][1000 genomes]
rs1522630	1.00[AMR][1000 genomes]
rs1620709	1.00[AMR][1000 genomes]
rs1718933	1.00[AMR][1000 genomes]
rs1718942	1.00[AMR][1000 genomes]
rs1718943	1.00[AMR][1000 genomes]
rs1718953	1.00[AMR][1000 genomes]
rs1718962	1.00[AMR][1000 genomes]
rs1796496	1.00[AMR][1000 genomes]
rs1796515	1.00[AMR][1000 genomes]
rs1830470	1.00[AMR][1000 genomes]
rs1830471	1.00[AMR][1000 genomes]
rs1868586	1.00[AMR][1000 genomes]
rs1976990	1.00[AMR][1000 genomes]
rs2103040	1.00[AMR][1000 genomes]
rs2197953	1.00[AMR][1000 genomes]
rs2396584	1.00[AMR][1000 genomes]
rs2396585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2396587	1.00[AMR][1000 genomes]
rs2687263	1.00[AMR][1000 genomes]
rs2687265	1.00[AMR][1000 genomes]
rs2687268	1.00[AMR][1000 genomes]
rs2687271	1.00[AMR][1000 genomes]
rs2708294	1.00[AMR][1000 genomes]
rs2894660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4336532	1.00[AMR][1000 genomes]
rs4727777	1.00[AMR][1000 genomes]
rs501621	1.00[AMR][1000 genomes]
rs551461	1.00[AMR][1000 genomes]
rs59930732	1.00[AMR][1000 genomes]
rs637075	1.00[AMR][1000 genomes]
rs6949796	1.00[AMR][1000 genomes]
rs6950289	1.00[AMR][1000 genomes]
rs7776679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7790704	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7790946	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7799048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs821784	1.00[AMR][1000 genomes]
rs821786	1.00[AMR][1000 genomes]
rs821788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758131	chr7:112492127-112768628	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759556	chr7:112492127-112768628	Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3692941	chr7:112571420-112614215	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv1027981	chr7:112577657-112613212	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv1020911	chr7:112581515-112615249	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112594200-112630400	Weak transcription	Left Ventricle	heart
2	chr7:112599000-112600000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:112599600-112600000	Enhancers	Monocytes-CD14+_RO01746	blood

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