Variant report

Variant	rs1525198
Chromosome Location	chr7:108464788-108464789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10224425	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1100226	0.94[ASN][1000 genomes]
rs1100227	0.94[ASN][1000 genomes]
rs12705501	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705520	1.00[ASN][1000 genomes]
rs1404686	1.00[ASN][1000 genomes]
rs1404687	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404689	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525181	1.00[ASN][1000 genomes]
rs1525183	1.00[ASN][1000 genomes]
rs1525200	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525202	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568856	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568857	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568858	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830037	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2396032	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2396034	1.00[ASN][1000 genomes]
rs4730333	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4730335	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56897220	1.00[ASN][1000 genomes]
rs58749654	1.00[ASN][1000 genomes]
rs6466256	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6976706	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7384561	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781125	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781585	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7782139	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7786936	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7786983	0.93[EUR][1000 genomes]
rs848409	0.94[ASN][1000 genomes]
rs848410	0.94[ASN][1000 genomes]
rs848412	0.94[ASN][1000 genomes]
rs848415	1.00[ASN][1000 genomes]
rs9649313	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1031096	chr7:108334543-108596014	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv888945	chr7:108445757-108521842	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108464400-108465600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links