Variant report

Variant	rs1830037
Chromosome Location	chr7:108484571-108484572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10224425	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1100226	0.89[ASN][1000 genomes]
rs1100227	0.89[ASN][1000 genomes]
rs12705501	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12705520	0.94[ASN][1000 genomes]
rs1404686	0.94[ASN][1000 genomes]
rs1404687	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1404689	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1525181	0.94[ASN][1000 genomes]
rs1525183	0.94[ASN][1000 genomes]
rs1525198	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1525200	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1525202	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1568856	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1568857	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1568858	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2396032	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2396034	0.94[ASN][1000 genomes]
rs4730333	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4730335	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56897220	0.94[ASN][1000 genomes]
rs58749654	0.94[ASN][1000 genomes]
rs6466256	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6976706	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7384561	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7781125	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7781585	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7782139	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7786936	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7786983	0.87[EUR][1000 genomes]
rs848409	0.89[ASN][1000 genomes]
rs848410	0.89[ASN][1000 genomes]
rs848412	0.89[ASN][1000 genomes]
rs848415	0.94[ASN][1000 genomes]
rs9649313	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1031096	chr7:108334543-108596014	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv888945	chr7:108445757-108521842	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108484000-108486000	Weak transcription	Fetal Brain Female	brain

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