Variant report

Variant	rs7786936
Chromosome Location	chr7:108465772-108465773
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10224425	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1100226	0.94[ASN][1000 genomes]
rs1100227	0.94[ASN][1000 genomes]
rs12705501	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12705520	1.00[ASN][1000 genomes]
rs1404686	1.00[ASN][1000 genomes]
rs1404687	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404689	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525181	1.00[ASN][1000 genomes]
rs1525183	1.00[ASN][1000 genomes]
rs1525198	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525200	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525202	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568856	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568857	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568858	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830037	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2396032	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2396034	1.00[ASN][1000 genomes]
rs4730333	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4730335	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56897220	1.00[ASN][1000 genomes]
rs58749654	1.00[ASN][1000 genomes]
rs6466256	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6976706	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7384561	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781125	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781585	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7782139	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7786983	0.97[EUR][1000 genomes]
rs848409	0.94[ASN][1000 genomes]
rs848410	0.94[ASN][1000 genomes]
rs848412	0.94[ASN][1000 genomes]
rs848415	1.00[ASN][1000 genomes]
rs9649313	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1031096	chr7:108334543-108596014	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv888945	chr7:108445757-108521842	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108464800-108466000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr7:108465000-108465800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:108465000-108466000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:108465000-108466000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:108465200-108465800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:108465200-108466000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:108465400-108465800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:108465400-108465800	Enhancers	Brain Anterior Caudate	brain
9	chr7:108465400-108466000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:108465400-108466000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:108465400-108466400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:108465600-108466000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:108465600-108466000	Enhancers	Fetal Muscle Leg	muscle
14	chr7:108465600-108466200	Flanking Active TSS	NH-A	brain

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