Variant report

Variant	rs7782139
Chromosome Location	chr7:108418594-108418595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10224425	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1100226	0.91[ASN][1000 genomes]
rs1100227	0.91[ASN][1000 genomes]
rs12705501	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12705520	0.97[ASN][1000 genomes]
rs1404686	0.97[ASN][1000 genomes]
rs1404687	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1404689	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1525181	0.97[ASN][1000 genomes]
rs1525183	0.97[ASN][1000 genomes]
rs1525198	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1525200	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1525202	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1568856	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1568857	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1568858	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1830037	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2396032	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2396034	0.97[ASN][1000 genomes]
rs3793324	0.83[EUR][1000 genomes]
rs4730333	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4730335	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55934431	0.83[EUR][1000 genomes]
rs56897220	0.97[ASN][1000 genomes]
rs58749654	0.97[ASN][1000 genomes]
rs59690416	0.83[EUR][1000 genomes]
rs6466256	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6976706	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73714737	0.83[EUR][1000 genomes]
rs7384561	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7781125	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7781585	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7786936	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7786983	0.93[EUR][1000 genomes]
rs848409	0.91[ASN][1000 genomes]
rs848410	0.91[ASN][1000 genomes]
rs848412	0.91[ASN][1000 genomes]
rs848415	0.97[ASN][1000 genomes]
rs9649313	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1031096	chr7:108334543-108596014	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv888944	chr7:108348785-108433790	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108418200-108419200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:108418400-108419000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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