Variant report

Variant	rs1536557
Chromosome Location	chr10:97137407-97137408
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11188298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596586	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1360005	0.82[ASN][1000 genomes]
rs1410597	0.84[ASN][1000 genomes]
rs1410598	0.84[ASN][1000 genomes]
rs1410600	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1536560	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2274489	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2274628	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35204215	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3740511	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3814149	0.81[ASN][1000 genomes]
rs4917686	0.84[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4918913	0.84[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs61868664	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6583996	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7068295	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7068868	0.89[ASN][1000 genomes]
rs7082473	0.87[ASN][1000 genomes]
rs7084585	0.89[ASN][1000 genomes]
rs7084589	0.89[ASN][1000 genomes]
rs7084645	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7897903	0.89[ASN][1000 genomes]
rs7899506	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7904853	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7919271	0.88[CHB][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:97116000-97138200	Weak transcription	Ovary	ovary
5	chr10:97116400-97139600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:97116600-97139400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:97116800-97137600	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:97116800-97141400	Weak transcription	Fetal Lung	lung
10	chr10:97117400-97139200	Weak transcription	Brain Germinal Matrix	brain
11	chr10:97117600-97138000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:97118000-97137800	Weak transcription	Pancreas	Pancrea
13	chr10:97120400-97141400	Weak transcription	Gastric	stomach
14	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
15	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
16	chr10:97126200-97139400	Weak transcription	Lung	lung
17	chr10:97126800-97137800	Weak transcription	HepG2	liver
18	chr10:97129400-97137800	Weak transcription	Right Atrium	heart
19	chr10:97130000-97138000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:97130200-97141600	Weak transcription	Fetal Intestine Small	intestine
21	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:97130800-97137800	Weak transcription	Fetal Stomach	stomach
23	chr10:97131200-97140200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:97131200-97140200	Weak transcription	HSMM	muscle
25	chr10:97131400-97137800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:97131600-97139800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:97131800-97140200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:97132000-97137800	Weak transcription	HSMMtube	muscle
29	chr10:97132000-97139200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr10:97132000-97139200	Weak transcription	Fetal Intestine Large	intestine
31	chr10:97132600-97137800	Weak transcription	Psoas Muscle	Psoas
32	chr10:97133000-97142400	Genic enhancers	Adipose Nuclei	Adipose
33	chr10:97135200-97138600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:97135400-97138200	Genic enhancers	Liver	Liver
35	chr10:97135600-97139000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr10:97135600-97139400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr10:97135600-97139800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr10:97135800-97138000	Enhancers	Stomach Smooth Muscle	stomach
40	chr10:97135800-97141600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr10:97135800-97145000	Strong transcription	Fetal Brain Female	brain
42	chr10:97136000-97137800	Weak transcription	Brain Anterior Caudate	brain
43	chr10:97136000-97137800	Weak transcription	Brain Substantia Nigra	brain
44	chr10:97136000-97141200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:97136200-97137800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr10:97136200-97137800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr10:97136200-97138000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:97136200-97138200	Weak transcription	Right Ventricle	heart
49	chr10:97136200-97139200	Weak transcription	Brain Angular Gyrus	brain
50	chr10:97136200-97145400	Strong transcription	Placenta	Placenta

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