Variant report

Variant	rs4917686
Chromosome Location	chr10:97122377-97122378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97096304..97097048-chr10:97121604..97122426,2	MCF-7	breast:
2	chr10:97050804..97052725-chr10:97120124..97123059,2	K562	blood:
3	chr10:97050675..97052304-chr10:97120111..97123059,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11188298	0.83[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11596586	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1360005	0.85[ASN][1000 genomes]
rs1410597	0.87[ASN][1000 genomes]
rs1410598	0.87[ASN][1000 genomes]
rs1410600	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1536557	0.84[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1536560	0.84[CEU][hapmap]
rs2078276	0.80[CEU][hapmap]
rs2274489	0.84[CEU][hapmap]
rs2274628	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35204215	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3740511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814149	0.84[ASN][1000 genomes]
rs4918913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4918915	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61868664	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6583996	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7068295	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.92[ASN][1000 genomes]
rs7068868	0.92[ASN][1000 genomes]
rs7082473	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7084585	0.92[ASN][1000 genomes]
rs7084589	0.92[ASN][1000 genomes]
rs7084645	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7897903	0.92[ASN][1000 genomes]
rs7899506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7904853	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7919271	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4917686	AVPI1	cis	parietal	SCAN
rs4917686	OSBPL8	trans	cerebellum	SCAN

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
4	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:97109000-97128200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:97111000-97127400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:97115800-97131600	Weak transcription	HSMMtube	muscle
9	chr10:97116000-97135000	Weak transcription	Brain Substantia Nigra	brain
10	chr10:97116000-97138200	Weak transcription	Ovary	ovary
11	chr10:97116400-97123000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:97116400-97130600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:97116400-97139600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:97116600-97127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:97116600-97130800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr10:97116600-97139400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr10:97116800-97122800	Weak transcription	Fetal Intestine Large	intestine
19	chr10:97116800-97123000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:97116800-97130400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:97116800-97135200	Weak transcription	Brain Angular Gyrus	brain
22	chr10:97116800-97137600	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:97116800-97141400	Weak transcription	Fetal Lung	lung
24	chr10:97117000-97122800	Weak transcription	Fetal Heart	heart
25	chr10:97117000-97123000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:97117000-97130800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr10:97117200-97122400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr10:97117200-97128000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr10:97117400-97139200	Weak transcription	Brain Germinal Matrix	brain
30	chr10:97117600-97125000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:97117600-97138000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr10:97118000-97135800	Weak transcription	Fetal Brain Female	brain
33	chr10:97118000-97137800	Weak transcription	Pancreas	Pancrea
34	chr10:97118200-97125000	Weak transcription	Placenta	Placenta
35	chr10:97119200-97122600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
36	chr10:97119600-97122600	Genic enhancers	Left Ventricle	heart
37	chr10:97120000-97122800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
38	chr10:97120400-97122800	Weak transcription	A549	lung
39	chr10:97120400-97124400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr10:97120400-97124800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr10:97120400-97127800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr10:97120400-97141400	Weak transcription	Gastric	stomach
43	chr10:97120600-97130400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr10:97121000-97122800	Weak transcription	HepG2	liver
45	chr10:97121000-97123000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr10:97121000-97123800	Genic enhancers	Adipose Nuclei	Adipose
47	chr10:97121000-97129400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
49	chr10:97121200-97122800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:97121200-97123000	Genic enhancers	Stomach Smooth Muscle	stomach

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