Variant report

Variant	rs7068868
Chromosome Location	chr10:97070082-97070083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97055273..97057323-chr10:97068658..97070274,2	K562	blood:
2	chr10:97049242..97050860-chr10:97068797..97070801,3	MCF-7	breast:
3	chr10:97063353..97065156-chr10:97068953..97071321,2	MCF-7	breast:
4	chr10:97067141..97070104-chr10:97084315..97087296,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11188298	0.89[ASN][1000 genomes]
rs11596586	0.87[ASN][1000 genomes]
rs1360005	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1410597	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1410598	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1410600	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1536557	0.89[ASN][1000 genomes]
rs2274628	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35204215	0.94[ASN][1000 genomes]
rs3740511	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3814149	0.92[ASN][1000 genomes]
rs4917686	0.92[ASN][1000 genomes]
rs4918913	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61868664	0.94[ASN][1000 genomes]
rs6583991	0.82[AMR][1000 genomes]
rs6583996	0.92[ASN][1000 genomes]
rs7068295	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082473	0.87[ASN][1000 genomes]
rs7084585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084589	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084645	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897903	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899506	0.94[ASN][1000 genomes]
rs7904853	0.89[ASN][1000 genomes]
rs7919271	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv552021	chr10:97053404-97071334	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97055600-97072800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:97057600-97070200	Weak transcription	Spleen	Spleen
3	chr10:97063400-97072400	Weak transcription	Fetal Brain Female	brain
4	chr10:97063400-97073600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:97063600-97070400	Weak transcription	Lung	lung
6	chr10:97064000-97073200	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:97064600-97070400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:97064600-97078200	Weak transcription	Colonic Mucosa	Colon
9	chr10:97064800-97070200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:97064800-97070600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:97065000-97070200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:97066000-97073000	Weak transcription	Fetal Intestine Large	intestine
13	chr10:97066000-97073600	Weak transcription	Fetal Intestine Small	intestine
14	chr10:97067000-97070800	Enhancers	Stomach Mucosa	stomach
15	chr10:97067200-97073400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:97067600-97070400	Enhancers	Duodenum Mucosa	Duodenum
17	chr10:97067600-97070800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:97067600-97071200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:97067800-97071000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr10:97068200-97070600	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr10:97068200-97071000	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr10:97068400-97071000	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr10:97068400-97072200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:97068600-97070400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:97068600-97071000	Enhancers	Primary B cells from peripheral blood	blood
26	chr10:97068600-97072000	Weak transcription	Adipose Nuclei	Adipose
27	chr10:97068600-97072800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:97068600-97073800	Weak transcription	Brain Angular Gyrus	brain
29	chr10:97068800-97070200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:97068800-97070400	Enhancers	Colon Smooth Muscle	Colon
31	chr10:97069000-97070200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:97069000-97070200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:97069000-97070200	Weak transcription	Fetal Heart	heart
34	chr10:97069000-97070400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr10:97069000-97070400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:97069000-97070400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:97069000-97070800	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr10:97069000-97072400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr10:97069000-97073000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr10:97069000-97073200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr10:97069000-97073400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr10:97069000-97073600	Weak transcription	HepG2	liver
43	chr10:97069000-97075600	Enhancers	K562	blood
44	chr10:97069200-97070200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr10:97069200-97070200	Enhancers	A549	lung
46	chr10:97069200-97070400	Weak transcription	Right Ventricle	heart
47	chr10:97069200-97072200	Weak transcription	HUVEC	blood vessel
48	chr10:97069200-97072600	Weak transcription	Psoas Muscle	Psoas
49	chr10:97069200-97072600	Weak transcription	HSMMtube	muscle
50	chr10:97069200-97087000	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links