Variant report

Variant	rs3740511
Chromosome Location	chr10:97081500-97081501
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97079430..97082419-chr10:97082702..97084637,2	MCF-7	breast:
2	chr10:97080779..97082633-chr10:97084694..97086898,2	K562	blood:
3	chr10:97080532..97082399-chr10:97094368..97096857,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11188298	0.83[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11596586	0.89[ASN][1000 genomes]
rs1360005	0.85[ASN][1000 genomes]
rs1410597	0.87[ASN][1000 genomes]
rs1410598	0.87[ASN][1000 genomes]
rs1410600	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1536557	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1536560	0.84[CEU][hapmap]
rs2078276	0.80[CEU][hapmap]
rs2274489	0.84[CEU][hapmap]
rs2274628	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35204215	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3814149	0.84[ASN][1000 genomes]
rs4917686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4918915	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61868664	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6583996	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7068295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7068868	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7082473	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7084585	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7084589	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7084645	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7897903	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7899506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7904853	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7919271	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97069200-97087000	Weak transcription	HSMM	muscle
2	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
3	chr10:97070800-97085800	Weak transcription	Small Intestine	intestine
4	chr10:97070800-97094200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:97071000-97086000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:97071000-97087000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:97071000-97087000	Weak transcription	Esophagus	oesophagus
8	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
9	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
10	chr10:97072000-97087000	Strong transcription	Adipose Nuclei	Adipose
11	chr10:97073000-97085000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:97073000-97085600	Weak transcription	Stomach Mucosa	stomach
13	chr10:97073400-97084200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:97073400-97092600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:97073400-97092800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr10:97073600-97095200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:97074400-97087400	Weak transcription	Spleen	Spleen
18	chr10:97074400-97095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:97074600-97084800	Weak transcription	Right Atrium	heart
20	chr10:97074600-97087000	Strong transcription	Aorta	Aorta
21	chr10:97074600-97095800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:97074800-97087000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:97075200-97087000	Weak transcription	Psoas Muscle	Psoas
24	chr10:97075200-97098800	Weak transcription	Ovary	ovary
25	chr10:97075600-97087000	Strong transcription	Stomach Smooth Muscle	stomach
26	chr10:97075800-97089000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr10:97076000-97082000	Strong transcription	Colon Smooth Muscle	Colon
28	chr10:97076200-97082600	Weak transcription	Fetal Heart	heart
29	chr10:97076400-97082600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:97077200-97084400	Strong transcription	Fetal Brain Female	brain
31	chr10:97079000-97085000	Strong transcription	Brain Germinal Matrix	brain
32	chr10:97079200-97081800	Strong transcription	Fetal Intestine Large	intestine
33	chr10:97079200-97085200	Strong transcription	Placenta	Placenta
34	chr10:97079400-97082000	Strong transcription	Rectal Smooth Muscle	rectum
35	chr10:97079400-97085000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:97079400-97085000	Strong transcription	Fetal Stomach	stomach
37	chr10:97079400-97101400	Weak transcription	Fetal Kidney	kidney
38	chr10:97079400-97106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr10:97079600-97081800	Strong transcription	Brain Angular Gyrus	brain
40	chr10:97079600-97083800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr10:97079600-97084400	Strong transcription	Liver	Liver
42	chr10:97079600-97084600	Strong transcription	Fetal Intestine Small	intestine
43	chr10:97079800-97082000	Strong transcription	Fetal Muscle Leg	muscle
44	chr10:97079800-97083800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:97080000-97083200	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:97080000-97083200	Strong transcription	Left Ventricle	heart
47	chr10:97080000-97084000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr10:97080000-97099000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
50	chr10:97080400-97081800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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