Variant report

Variant	rs7899506
Chromosome Location	chr10:97118644-97118645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97110313..97112983-chr10:97116773..97120494,3	K562	blood:
2	chr10:97110313..97112441-chr10:97116773..97119472,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11188298	0.82[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11596586	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1360005	0.87[ASN][1000 genomes]
rs1410597	0.89[ASN][1000 genomes]
rs1410598	0.89[ASN][1000 genomes]
rs1410600	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1536557	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1536560	0.83[CEU][hapmap]
rs2078276	0.83[CEU][hapmap]
rs2274489	0.83[CEU][hapmap]
rs2274628	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35204215	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3814149	0.87[ASN][1000 genomes]
rs4917686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4918915	0.88[EUR][1000 genomes]
rs61868664	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583996	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7068295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7068868	0.94[ASN][1000 genomes]
rs7082473	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7084585	0.94[ASN][1000 genomes]
rs7084589	0.94[ASN][1000 genomes]
rs7084645	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7897903	0.94[ASN][1000 genomes]
rs7904853	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[ASN][1000 genomes]
rs7919271	0.86[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
4	chr10:97107200-97120200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:97107600-97119800	Strong transcription	Fetal Stomach	stomach
7	chr10:97107800-97119400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:97108600-97119200	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:97109000-97128200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:97109200-97120000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:97111000-97127400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:97112600-97118800	Strong transcription	Brain Hippocampus Middle	brain
14	chr10:97114400-97119200	Strong transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:97114400-97119600	Weak transcription	GM12878-XiMat	blood
16	chr10:97114800-97120800	Genic enhancers	Stomach Smooth Muscle	stomach
17	chr10:97115400-97120000	Weak transcription	HUVEC	blood vessel
18	chr10:97115600-97119600	Strong transcription	Left Ventricle	heart
19	chr10:97115800-97120000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:97115800-97131600	Weak transcription	HSMMtube	muscle
21	chr10:97116000-97119600	Strong transcription	Lung	lung
22	chr10:97116000-97135000	Weak transcription	Brain Substantia Nigra	brain
23	chr10:97116000-97138200	Weak transcription	Ovary	ovary
24	chr10:97116400-97120200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:97116400-97121600	Weak transcription	Right Atrium	heart
26	chr10:97116400-97121800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:97116400-97123000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr10:97116400-97130600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:97116400-97139600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:97116600-97119000	Strong transcription	Right Ventricle	heart
32	chr10:97116600-97120000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr10:97116600-97120200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr10:97116600-97120200	Weak transcription	Esophagus	oesophagus
35	chr10:97116600-97120600	Strong transcription	Adipose Nuclei	Adipose
36	chr10:97116600-97120800	Weak transcription	Spleen	Spleen
37	chr10:97116600-97127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:97116600-97130800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr10:97116600-97139400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr10:97116800-97119400	Genic enhancers	Colon Smooth Muscle	Colon
41	chr10:97116800-97120200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:97116800-97121600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr10:97116800-97122800	Weak transcription	Fetal Intestine Large	intestine
44	chr10:97116800-97123000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:97116800-97130400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr10:97116800-97135200	Weak transcription	Brain Angular Gyrus	brain
47	chr10:97116800-97137600	Weak transcription	Fetal Muscle Leg	muscle
48	chr10:97116800-97141400	Weak transcription	Fetal Lung	lung
49	chr10:97117000-97119600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:97117000-97120000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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