Variant report

Variant rs153815
Chromosome Location chr5:178763785-178763786
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:178748200-178766600 Weak transcription Muscle Satellite Cultured Cells --
2 chr5:178752600-178764400 Weak transcription Esophagus oesophagus
3 chr5:178754200-178768800 Weak transcription NHDF-Ad bronchial
4 chr5:178754400-178763800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr5:178757800-178768200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr5:178759200-178768800 Weak transcription HSMMtube muscle
7 chr5:178759400-178769000 Weak transcription HSMM muscle
8 chr5:178760200-178763800 Weak transcription Spleen Spleen
9 chr5:178760800-178768200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
10 chr5:178761000-178766000 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr5:178761000-178768200 Strong transcription Osteobl bone
12 chr5:178761200-178763800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr5:178761400-178764200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr5:178761400-178765000 Weak transcription HUES6 Cell Line embryonic stem cell
15 chr5:178761400-178769000 Weak transcription Fetal Intestine Small intestine
16 chr5:178761600-178764000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr5:178761800-178767000 Weak transcription Ovary ovary
18 chr5:178762200-178764200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr5:178762600-178763800 Strong transcription Breast Myoepithelial Primary Cells Breast
20 chr5:178762600-178764200 Bivalent Enhancer Fetal Muscle Leg muscle
21 chr5:178762600-178770800 Weak transcription Aorta Aorta
22 chr5:178762800-178764200 Weak transcription Fetal Lung lung
23 chr5:178762800-178765600 Bivalent Enhancer Fetal Muscle Trunk muscle
24 chr5:178763000-178764200 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
25 chr5:178763200-178763800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr5:178763200-178763800 Strong transcription Fetal Stomach stomach
27 chr5:178763200-178764200 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
28 chr5:178763200-178764800 Strong transcription NHLF lung
29 chr5:178763200-178765000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
30 chr5:178763200-178765200 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr5:178763200-178766800 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin01 Skin
32 chr5:178763400-178763800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr5:178763400-178763800 Active TSS Brain Substantia Nigra brain
34 chr5:178763400-178764000 Enhancers H1 Cell Line embryonic stem cell
35 chr5:178763400-178764000 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr5:178763400-178764200 Active TSS Brain Anterior Caudate brain
37 chr5:178763400-178766400 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
38 chr5:178763600-178763800 Enhancers iPS-15b Cell Line embryonic stem cell
39 chr5:178763600-178763800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
40 chr5:178763600-178763800 Active TSS Brain Angular Gyrus brain
41 chr5:178763600-178763800 Bivalent/Poised TSS Brain Germinal Matrix brain
42 chr5:178763600-178763800 Active TSS Brain Inferior Temporal Lobe brain
43 chr5:178763600-178763800 Active TSS Brain Dorsolateral Prefrontal Cortex brain
44 chr5:178763600-178764000 Flanking Active TSS Adipose Nuclei Adipose
45 chr5:178763600-178764000 Active TSS Brain Cingulate Gyrus brain
46 chr5:178763600-178764200 Bivalent Enhancer Cortex derived primary cultured neurospheres brain
47 chr5:178763600-178766600 Enhancers Placenta Amnion Placenta Amnion

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