Variant report

Variant	rs1539680
Chromosome Location	chr10:18502889-18502890
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1277729	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs1277763	0.87[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1277767	0.82[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1757215	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2482113	0.80[EUR][1000 genomes]
rs2482117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2482118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2489205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2489206	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3469840	chr10:18501971-18504819	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3346215	chr10:18502321-18504569	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3468729	chr10:18502796-18504044	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18485000-18503800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:18493800-18503800	Weak transcription	Fetal Brain Male	brain
3	chr10:18494400-18503600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:18497800-18503000	Enhancers	Fetal Heart	heart
5	chr10:18499200-18511000	Weak transcription	Aorta	Aorta
6	chr10:18500000-18504800	Enhancers	Rectal Smooth Muscle	rectum
7	chr10:18500200-18506000	Weak transcription	Right Atrium	heart
8	chr10:18500400-18503600	Enhancers	Colon Smooth Muscle	Colon
9	chr10:18501200-18503400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:18501400-18503000	Enhancers	Stomach Smooth Muscle	stomach
11	chr10:18502000-18504400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr10:18502200-18503000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr10:18502200-18503600	Weak transcription	Brain Angular Gyrus	brain
14	chr10:18502200-18503600	Weak transcription	Left Ventricle	heart
15	chr10:18502200-18503600	Weak transcription	Ovary	ovary
16	chr10:18502400-18503600	Weak transcription	Fetal Stomach	stomach
17	chr10:18502400-18503600	Weak transcription	Pancreas	Pancrea
18	chr10:18502400-18503800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:18502400-18513600	Weak transcription	Right Ventricle	heart
20	chr10:18502600-18503600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:18502800-18503600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:18502800-18505400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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