Variant report

Variant	rs2489205
Chromosome Location	chr10:18505899-18505900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1277729	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs1277763	0.87[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1277767	0.82[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1539680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1757215	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2482113	0.83[EUR][1000 genomes]
rs2482117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2482118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2489206	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18499200-18511000	Weak transcription	Aorta	Aorta
2	chr10:18500200-18506000	Weak transcription	Right Atrium	heart
3	chr10:18502400-18513600	Weak transcription	Right Ventricle	heart
4	chr10:18504400-18506000	Weak transcription	Pancreas	Pancrea
5	chr10:18504400-18506400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:18504400-18506600	Weak transcription	Left Ventricle	heart
7	chr10:18504400-18508400	Weak transcription	Brain Anterior Caudate	brain
8	chr10:18504400-18510400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:18504800-18506200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:18504800-18513400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:18505400-18506000	Enhancers	Fetal Lung	lung
12	chr10:18505400-18513400	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:18505600-18506600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:18505600-18506600	Weak transcription	Ovary	ovary
15	chr10:18505600-18508400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:18505800-18506200	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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