Variant report

Variant	rs155541
Chromosome Location	chr5:36162963-36162964
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36162218..36166672-chr5:36172518..36174152,4	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11742765	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs190344	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs249251	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27127	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs33661	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs33662	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs33665	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs33666	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs33667	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs33668	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33669	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs33676	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs33679	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37217	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs37219	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs37220	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36153200-36164000	Weak transcription	Colonic Mucosa	Colon
2	chr5:36153800-36164000	Weak transcription	Pancreas	Pancrea
3	chr5:36153800-36184400	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:36154000-36168200	Strong transcription	Primary T cells from cord blood	blood
5	chr5:36154000-36168200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:36154000-36175400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:36154000-36175600	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr5:36154000-36175600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:36154000-36184200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:36154200-36168400	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr5:36154200-36179000	Strong transcription	A549	lung
12	chr5:36154200-36184400	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr5:36154200-36184400	Strong transcription	Fetal Thymus	thymus
14	chr5:36154400-36164800	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr5:36154400-36175000	Strong transcription	Primary B cells from peripheral blood	blood
16	chr5:36154400-36175200	Strong transcription	Thymus	Thymus
17	chr5:36154400-36184400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
19	chr5:36154600-36163200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr5:36154600-36164000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr5:36154600-36168000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr5:36154600-36168200	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr5:36154600-36176000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:36155000-36163600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr5:36155200-36176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr5:36155800-36166000	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr5:36156000-36176400	Strong transcription	Primary B cells from cord blood	blood
28	chr5:36156400-36163800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr5:36156600-36175400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:36156600-36176000	Strong transcription	K562	blood
31	chr5:36156600-36178000	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr5:36156800-36163600	Weak transcription	Right Ventricle	heart
33	chr5:36156800-36164400	Strong transcription	Fetal Kidney	kidney
34	chr5:36156800-36173600	Weak transcription	Psoas Muscle	Psoas
35	chr5:36156800-36175400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr5:36157000-36172600	Strong transcription	Fetal Lung	lung
37	chr5:36157600-36164800	Strong transcription	Lung	lung
38	chr5:36157800-36169200	Strong transcription	NHLF	lung
39	chr5:36158200-36163000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr5:36158200-36164800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr5:36158200-36175800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr5:36158200-36183200	Strong transcription	Hela-S3	cervix
43	chr5:36158400-36164600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr5:36158400-36182000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr5:36158400-36184400	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr5:36158600-36164200	Strong transcription	Left Ventricle	heart
47	chr5:36158600-36164800	Strong transcription	Fetal Stomach	stomach
48	chr5:36158600-36170800	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr5:36158600-36176000	Strong transcription	Osteobl	bone
50	chr5:36158600-36184600	Strong transcription	Primary monocytes fromperipheralblood	blood

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