Variant report

Variant	rs33676
Chromosome Location	chr5:36156091-36156092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr5:36156085-36156454	IMR90	lung:	n/a	chr5:36156265-36156278 chr5:36156265-36156278 chr5:36156265-36156276
2	EP300	chr5:36155969-36159687	SK-N-SH	brain:	n/a	chr5:36157593-36157603 chr5:36158707-36158720 chr5:36158685-36158699

No.	Distal block	Cell Line	Cell type
1	chr5:36151113..36153475-chr5:36154153..36156176,2	MCF-7	breast:
2	chr5:36149758..36152986-chr5:36154099..36157491,3	MCF-7	breast:
3	chr5:36150277..36153703-chr5:36154371..36162094,13	K562	blood:

Variant related genes	Relation type
LMBRD2	TF binding region
ENSG00000164187	Chromatin interaction
ENSG00000145604	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11742765	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs155541	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs190344	0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs249251	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs27127	0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs33661	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs33662	1.00[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs33665	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33666	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33667	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33668	1.00[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs33669	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33679	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs37217	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs37219	1.00[CEU][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs37220	1.00[CEU][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36153000-36156200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:36153000-36156400	Weak transcription	Aorta	Aorta
3	chr5:36153000-36156400	Transcr. at gene 5' and 3'	HSMM	muscle
4	chr5:36153200-36156400	Weak transcription	Esophagus	oesophagus
5	chr5:36153200-36157400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:36153200-36157600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr5:36153200-36158000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:36153200-36160800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:36153200-36164000	Weak transcription	Colonic Mucosa	Colon
10	chr5:36153400-36156200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:36153400-36156800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:36153400-36156800	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
13	chr5:36153600-36156400	Weak transcription	Psoas Muscle	Psoas
14	chr5:36153600-36157400	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr5:36153600-36159000	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:36153800-36156200	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:36153800-36156400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:36153800-36158400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:36153800-36159000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr5:36153800-36160800	Weak transcription	Gastric	stomach
21	chr5:36153800-36162600	Strong transcription	H9 Cell Line	embryonic stem cell
22	chr5:36153800-36164000	Weak transcription	Pancreas	Pancrea
23	chr5:36153800-36184400	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr5:36154000-36156200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:36154000-36156200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr5:36154000-36156200	Weak transcription	Ovary	ovary
27	chr5:36154000-36156200	Weak transcription	Right Atrium	heart
28	chr5:36154000-36156800	Genic enhancers	Fetal Intestine Small	intestine
29	chr5:36154000-36158000	Strong transcription	Brain Inferior Temporal Lobe	brain
30	chr5:36154000-36158400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr5:36154000-36159600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr5:36154000-36160600	Weak transcription	Stomach Mucosa	stomach
33	chr5:36154000-36162000	Genic enhancers	HepG2	liver
34	chr5:36154000-36162600	Genic enhancers	Fetal Intestine Large	intestine
35	chr5:36154000-36168200	Strong transcription	Primary T cells from cord blood	blood
36	chr5:36154000-36168200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr5:36154000-36175400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr5:36154000-36175600	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr5:36154000-36175600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr5:36154000-36184200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:36154200-36156200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr5:36154200-36156400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr5:36154200-36156400	Enhancers	Fetal Heart	heart
44	chr5:36154200-36156600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr5:36154200-36156600	Weak transcription	Fetal Brain Male	brain
46	chr5:36154200-36156800	Strong transcription	Primary hematopoietic stem cells	blood
47	chr5:36154200-36157200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr5:36154200-36158800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr5:36154200-36168400	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr5:36154200-36179000	Strong transcription	A549	lung

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