Variant report

Variant	rs33665
Chromosome Location	chr5:36169706-36169707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36159711..36161670-chr5:36169419..36171924,2	K562	blood:
2	chr5:36148896..36152080-chr5:36169090..36171364,3	K562	blood:
3	chr5:36159082..36161211-chr5:36169419..36172418,2	K562	blood:
4	chr5:36149929..36152080-chr5:36169120..36171364,2	K562	blood:

Variant related genes	Relation type
ENSG00000164187	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11742765	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs155541	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs190344	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2287934	0.80[YRI][hapmap]
rs249251	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs27127	0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33661	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs33662	1.00[CEU][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33666	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33667	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33668	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.87[LWK][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs33669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33676	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33678	0.94[GIH][hapmap]
rs33679	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs37217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37219	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs37220	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36153800-36184400	Strong transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:36154000-36175400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:36154000-36175600	Strong transcription	H1 Cell Line	embryonic stem cell
4	chr5:36154000-36175600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:36154000-36184200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:36154200-36179000	Strong transcription	A549	lung
7	chr5:36154200-36184400	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:36154200-36184400	Strong transcription	Fetal Thymus	thymus
9	chr5:36154400-36175000	Strong transcription	Primary B cells from peripheral blood	blood
10	chr5:36154400-36175200	Strong transcription	Thymus	Thymus
11	chr5:36154400-36184400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
13	chr5:36154600-36176000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:36155200-36176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:36156000-36176400	Strong transcription	Primary B cells from cord blood	blood
16	chr5:36156600-36175400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr5:36156600-36176000	Strong transcription	K562	blood
18	chr5:36156600-36178000	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr5:36156800-36173600	Weak transcription	Psoas Muscle	Psoas
20	chr5:36156800-36175400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:36157000-36172600	Strong transcription	Fetal Lung	lung
22	chr5:36158200-36175800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr5:36158200-36183200	Strong transcription	Hela-S3	cervix
24	chr5:36158400-36182000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:36158400-36184400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr5:36158600-36170800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr5:36158600-36176000	Strong transcription	Osteobl	bone
28	chr5:36158600-36184600	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr5:36158600-36185600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr5:36158800-36175200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:36158800-36175400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr5:36159000-36170000	Strong transcription	Brain Germinal Matrix	brain
33	chr5:36159000-36170000	Strong transcription	Fetal Brain Female	brain
34	chr5:36159200-36175200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr5:36159200-36175800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr5:36159600-36174000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr5:36159600-36174000	Strong transcription	Adipose Nuclei	Adipose
38	chr5:36159800-36175400	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr5:36159800-36176000	Strong transcription	Primary hematopoietic stem cells	blood
40	chr5:36160000-36175400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr5:36160000-36175800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr5:36160200-36173600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr5:36160200-36175400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr5:36160200-36175600	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr5:36160800-36175400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr5:36160800-36175400	Strong transcription	HSMMtube	muscle
47	chr5:36161200-36175800	Strong transcription	HSMM	muscle
48	chr5:36161600-36174800	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr5:36161800-36184400	Strong transcription	Dnd41	blood
50	chr5:36162000-36170800	Strong transcription	Liver	Liver

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