Variant report

Variant	rs37220
Chromosome Location	chr5:36175290-36175291
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36150212..36152572-chr5:36173606..36175565,2	K562	blood:

Variant related genes	Relation type
ENSG00000145604	Chromatin interaction
ENSG00000164187	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11742765	0.90[ASN][1000 genomes]
rs155541	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs190344	0.84[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs249251	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs27127	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs33661	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33662	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs33665	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs33666	1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs33667	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs33668	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33669	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs33676	1.00[CEU][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs33679	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs37217	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs37219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36153800-36184400	Strong transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:36154000-36175400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:36154000-36175600	Strong transcription	H1 Cell Line	embryonic stem cell
4	chr5:36154000-36175600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:36154000-36184200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:36154200-36179000	Strong transcription	A549	lung
7	chr5:36154200-36184400	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:36154200-36184400	Strong transcription	Fetal Thymus	thymus
9	chr5:36154400-36184400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
11	chr5:36154600-36176000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:36155200-36176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:36156000-36176400	Strong transcription	Primary B cells from cord blood	blood
14	chr5:36156600-36175400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:36156600-36176000	Strong transcription	K562	blood
16	chr5:36156600-36178000	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:36156800-36175400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:36158200-36175800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr5:36158200-36183200	Strong transcription	Hela-S3	cervix
20	chr5:36158400-36182000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:36158400-36184400	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr5:36158600-36176000	Strong transcription	Osteobl	bone
23	chr5:36158600-36184600	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr5:36158600-36185600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr5:36158800-36175400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:36159200-36175800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr5:36159800-36175400	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr5:36159800-36176000	Strong transcription	Primary hematopoietic stem cells	blood
29	chr5:36160000-36175400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr5:36160000-36175800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr5:36160200-36175400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr5:36160200-36175600	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr5:36160800-36175400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr5:36160800-36175400	Strong transcription	HSMMtube	muscle
35	chr5:36161200-36175800	Strong transcription	HSMM	muscle
36	chr5:36161800-36184400	Strong transcription	Dnd41	blood
37	chr5:36162000-36176000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr5:36162200-36180600	Weak transcription	Stomach Mucosa	stomach
39	chr5:36162400-36175400	Strong transcription	HMEC	breast
40	chr5:36162400-36183000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr5:36162400-36184400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr5:36162800-36177000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr5:36163800-36200600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr5:36164400-36175600	Strong transcription	Fetal Muscle Trunk	muscle
45	chr5:36164800-36175400	Strong transcription	Fetal Intestine Large	intestine
46	chr5:36164800-36175600	Strong transcription	Fetal Muscle Leg	muscle
47	chr5:36164800-36220800	Weak transcription	Gastric	stomach
48	chr5:36166400-36175600	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr5:36166600-36175800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr5:36166800-36181400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links