Variant report

Variant	rs27127
Chromosome Location	chr5:36176016-36176017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36175359..36180718-chr5:36239202..36245572,9	K562	blood:
2	chr5:36170215..36174544-chr5:36175515..36177695,5	K562	blood:
3	chr5:36175359..36178197-chr5:36240518..36242976,3	K562	blood:

Variant related genes	Relation type
ENSG00000152620	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11742765	0.86[ASN][1000 genomes]
rs155541	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs190344	0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs249251	0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs33661	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs33662	0.96[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33665	0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33666	0.96[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33667	0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33668	0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs33669	0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33676	0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs33679	0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs37217	0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs37219	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs37220	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36153800-36184400	Strong transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:36154000-36184200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:36154200-36179000	Strong transcription	A549	lung
4	chr5:36154200-36184400	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:36154200-36184400	Strong transcription	Fetal Thymus	thymus
6	chr5:36154400-36184400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
8	chr5:36156000-36176400	Strong transcription	Primary B cells from cord blood	blood
9	chr5:36156600-36178000	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:36158200-36183200	Strong transcription	Hela-S3	cervix
11	chr5:36158400-36182000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:36158400-36184400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr5:36158600-36184600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr5:36158600-36185600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:36161800-36184400	Strong transcription	Dnd41	blood
16	chr5:36162200-36180600	Weak transcription	Stomach Mucosa	stomach
17	chr5:36162400-36183000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:36162400-36184400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:36162800-36177000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:36163800-36200600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr5:36164800-36220800	Weak transcription	Gastric	stomach
22	chr5:36166800-36181400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:36167200-36182800	Strong transcription	NH-A	brain
24	chr5:36169000-36182600	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr5:36169200-36181800	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr5:36169200-36193200	Weak transcription	Pancreas	Pancrea
27	chr5:36169400-36181800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr5:36169600-36182400	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr5:36169600-36202400	Weak transcription	Fetal Heart	heart
30	chr5:36170200-36182400	Strong transcription	HUVEC	blood vessel
31	chr5:36170600-36177800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr5:36171200-36181200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr5:36171800-36220600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr5:36172000-36185200	Weak transcription	Esophagus	oesophagus
35	chr5:36172000-36229200	Weak transcription	Colonic Mucosa	Colon
36	chr5:36172400-36189400	Weak transcription	Fetal Intestine Small	intestine
37	chr5:36172400-36189600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr5:36174200-36181400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr5:36174200-36195200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr5:36174400-36177400	Weak transcription	Colon Smooth Muscle	Colon
41	chr5:36174400-36190800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr5:36174800-36177200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr5:36174800-36177400	Weak transcription	Brain Anterior Caudate	brain
44	chr5:36175000-36177200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr5:36175000-36177400	Weak transcription	Primary B cells from peripheral blood	blood
46	chr5:36175000-36177400	Weak transcription	Fetal Brain Male	brain
47	chr5:36175000-36178000	Weak transcription	NHLF	lung
48	chr5:36175000-36178600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr5:36175000-36180200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr5:36175000-36181400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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