Variant report
| Variant | rs1569274 |
|---|---|
| Chromosome Location | chr2:124933088-124933089 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:58)
| rs_ID | r2[population] |
|---|---|
| rs10181162 | 1.00[AMR][1000 genomes] |
| rs10196297 | 1.00[AMR][1000 genomes] |
| rs10204261 | 1.00[AMR][1000 genomes] |
| rs1170637 | 0.90[YRI][hapmap] |
| rs1213959 | 1.00[AMR][1000 genomes] |
| rs12470976 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12711668 | 1.00[AMR][1000 genomes] |
| rs12711669 | 1.00[AMR][1000 genomes] |
| rs12711670 | 1.00[AMR][1000 genomes] |
| rs13382328 | 1.00[AMR][1000 genomes] |
| rs13412940 | 1.00[AMR][1000 genomes] |
| rs13421371 | 1.00[AMR][1000 genomes] |
| rs13429933 | 1.00[AMR][1000 genomes] |
| rs1358670 | 1.00[AMR][1000 genomes] |
| rs1358671 | 0.91[MKK][hapmap];1.00[AMR][1000 genomes] |
| rs1358672 | 1.00[AMR][1000 genomes] |
| rs1358673 | 1.00[AMR][1000 genomes] |
| rs1358674 | 1.00[AMR][1000 genomes] |
| rs1358675 | 1.00[AMR][1000 genomes] |
| rs1358676 | 1.00[AMR][1000 genomes] |
| rs1406659 | 0.91[MKK][hapmap];1.00[AMR][1000 genomes] |
| rs1529293 | 1.00[AMR][1000 genomes] |
| rs1529300 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1529302 | 1.00[AMR][1000 genomes] |
| rs1529303 | 1.00[AMR][1000 genomes] |
| rs1529304 | 1.00[AMR][1000 genomes] |
| rs1529305 | 1.00[AMR][1000 genomes] |
| rs1540892 | 0.83[MKK][hapmap];1.00[AMR][1000 genomes] |
| rs1830464 | 0.92[YRI][hapmap] |
| rs1919834 | 1.00[AMR][1000 genomes] |
| rs1919835 | 0.84[MKK][hapmap] |
| rs1919836 | 0.84[MKK][hapmap] |
| rs1919845 | 1.00[AMR][1000 genomes] |
| rs1919846 | 1.00[AMR][1000 genomes] |
| rs1919847 | 1.00[AMR][1000 genomes] |
| rs1919848 | 1.00[AMR][1000 genomes] |
| rs1919849 | 0.91[MKK][hapmap];1.00[AMR][1000 genomes] |
| rs2141541 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2439004 | 1.00[AMR][1000 genomes] |
| rs2565757 | 1.00[AMR][1000 genomes] |
| rs2565758 | 1.00[AMR][1000 genomes] |
| rs2579822 | 1.00[AMR][1000 genomes] |
| rs2699368 | 0.91[MKK][hapmap];1.00[AMR][1000 genomes] |
| rs2699369 | 1.00[AMR][1000 genomes] |
| rs2699370 | 1.00[AMR][1000 genomes] |
| rs2699371 | 1.00[AMR][1000 genomes] |
| rs2699372 | 1.00[AMR][1000 genomes] |
| rs2699373 | 1.00[AMR][1000 genomes] |
| rs4241118 | 1.00[AMR][1000 genomes] |
| rs4312500 | 1.00[ASW][hapmap];1.00[YRI][hapmap] |
| rs4505528 | 1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs4567938 | 1.00[YRI][hapmap] |
| rs6731948 | 1.00[AMR][1000 genomes] |
| rs6740328 | 1.00[AMR][1000 genomes] |
| rs6747933 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6758903 | 1.00[CEU][hapmap] |
| rs7567589 | 1.00[ASW][hapmap];1.00[AMR][1000 genomes] |
| rs7579069 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531408 | chr2:124727329-125011247 | Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv874989 | chr2:124892592-125176030 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
