Variant report

Variant	rs1610643
Chromosome Location	chr6:29759310-29759311
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL1	chr6:29758249-29759360	HCT-116	colon:	n/a	chr6:29758603-29758611 chr6:29758601-29758613 chr6:29758604-29758615

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29755459..29758755-chr6:29758827..29760410,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFP57-14	chr6:29758808-29760850	NONHSAT108552

Variant related genes	Relation type
HLA-V	TF binding region
ENSG00000181126	Chromatin interaction

Extended variants
information (count: 187 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:165)

rs_ID	r²[population]
rs1077433	0.80[EUR][1000 genomes]
rs1079599	0.80[EUR][1000 genomes]
rs1111673	0.80[EUR][1000 genomes]
rs1318083	0.80[EUR][1000 genomes]
rs1419641	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610635	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610636	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610637	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610641	0.80[EUR][1000 genomes]
rs1610642	0.80[EUR][1000 genomes]
rs1610644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1610646	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1610654	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1610655	0.87[EUR][1000 genomes]
rs1610658	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1610659	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1610661	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1610662	0.87[EUR][1000 genomes]
rs1610664	0.80[EUR][1000 genomes]
rs1610665	0.88[EUR][1000 genomes]
rs1610666	0.80[EUR][1000 genomes]
rs1610697	0.88[EUR][1000 genomes]
rs1610698	0.88[EUR][1000 genomes]
rs1610709	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1610710	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1610711	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1610714	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1610715	0.88[EUR][1000 genomes]
rs1610717	0.80[EUR][1000 genomes]
rs1610722	0.80[EUR][1000 genomes]
rs1610723	0.80[EUR][1000 genomes]
rs1610724	0.80[EUR][1000 genomes]
rs1610725	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1610726	0.86[EUR][1000 genomes]
rs1611143	0.80[EUR][1000 genomes]
rs1611172	0.86[EUR][1000 genomes]
rs1611175	0.85[EUR][1000 genomes]
rs1611176	0.81[EUR][1000 genomes]
rs1611180	0.82[EUR][1000 genomes]
rs1611191	0.88[EUR][1000 genomes]
rs1611195	0.88[EUR][1000 genomes]
rs1611196	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611199	0.80[EUR][1000 genomes]
rs1611200	0.80[EUR][1000 genomes]
rs1611213	0.80[EUR][1000 genomes]
rs1611218	0.80[EUR][1000 genomes]
rs1611222	0.80[EUR][1000 genomes]
rs1611228	0.86[EUR][1000 genomes]
rs1611229	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611230	0.80[EUR][1000 genomes]
rs1611233	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1611246	0.81[EUR][1000 genomes]
rs1611252	0.87[EUR][1000 genomes]
rs1611260	0.85[EUR][1000 genomes]
rs1611265	0.82[EUR][1000 genomes]
rs1611267	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1611270	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611271	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1611275	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1612392	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1614309	0.87[EUR][1000 genomes]
rs1615962	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1618670	0.84[EUR][1000 genomes]
rs1620173	0.82[EUR][1000 genomes]
rs1624302	0.87[EUR][1000 genomes]
rs1629068	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1630969	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1632973	0.88[EUR][1000 genomes]
rs1632976	0.87[EUR][1000 genomes]
rs1632979	0.87[EUR][1000 genomes]
rs1632987	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1632988	0.85[EUR][1000 genomes]
rs1632997	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1633000	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1633001	0.81[EUR][1000 genomes]
rs1633002	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1633004	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1633006	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1633007	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1633009	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633010	0.87[EUR][1000 genomes]
rs1633011	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633014	0.87[EUR][1000 genomes]
rs1633015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633016	0.86[EUR][1000 genomes]
rs1633018	0.86[EUR][1000 genomes]
rs1633019	0.83[EUR][1000 genomes]
rs1633020	0.86[EUR][1000 genomes]
rs1633022	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633023	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633028	0.87[EUR][1000 genomes]
rs1633029	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1633030	0.87[EUR][1000 genomes]
rs1633032	0.87[EUR][1000 genomes]
rs1633033	0.87[EUR][1000 genomes]
rs1633034	0.84[EUR][1000 genomes]
rs1633035	0.84[EUR][1000 genomes]
rs1633041	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1736955	0.80[EUR][1000 genomes]
rs1736958	0.80[EUR][1000 genomes]
rs1736959	0.80[EUR][1000 genomes]
rs1736963	0.87[EUR][1000 genomes]
rs1736964	0.88[EUR][1000 genomes]
rs1736966	0.88[EUR][1000 genomes]
rs1736967	0.88[EUR][1000 genomes]
rs1736968	0.88[EUR][1000 genomes]
rs1736969	0.88[EUR][1000 genomes]
rs1736970	0.80[EUR][1000 genomes]
rs1736971	0.88[EUR][1000 genomes]
rs1736972	0.87[EUR][1000 genomes]
rs1736973	0.87[EUR][1000 genomes]
rs1736974	0.87[EUR][1000 genomes]
rs1736975	0.87[EUR][1000 genomes]
rs1736983	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1736985	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1736986	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1736994	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1736999	0.80[EUR][1000 genomes]
rs1737000	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1737002	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1737003	0.80[EUR][1000 genomes]
rs1737013	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737015	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737019	0.83[EUR][1000 genomes]
rs1737020	0.83[EUR][1000 genomes]
rs1737029	0.86[EUR][1000 genomes]
rs1737031	0.86[EUR][1000 genomes]
rs1737032	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737035	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737036	0.86[EUR][1000 genomes]
rs1737037	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737038	0.86[EUR][1000 genomes]
rs1737040	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737041	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737042	0.86[EUR][1000 genomes]
rs1737044	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737045	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1737047	0.85[EUR][1000 genomes]
rs1737048	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1737049	0.86[EUR][1000 genomes]
rs1737050	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737051	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1737054	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737056	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1737057	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1737059	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2248870	0.87[EUR][1000 genomes]
rs2248871	0.87[EUR][1000 genomes]
rs2517919	0.85[EUR][1000 genomes]
rs2517920	0.85[EUR][1000 genomes]
rs2523410	0.85[EUR][1000 genomes]
rs2735029	0.88[EUR][1000 genomes]
rs2735042	0.86[EUR][1000 genomes]
rs2735044	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2743942	0.83[AMR][1000 genomes]
rs2844837	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28514417	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2893981	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3129185	0.83[EUR][1000 genomes]
rs885938	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885939	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885940	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9258288	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9258289	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9258448	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv428475	chr6:29659525-29763392	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv428139	chr6:29659525-29892317	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv508397	chr6:29663132-29761448	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv1794141	chr6:29670915-29765814	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv10809	chr6:29692573-29794119	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv883532	chr6:29703262-29814963	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	esv11180	chr6:29729381-29800066	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	esv3332677	chr6:29733187-29961463	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
12	esv3423001	chr6:29733216-29878601	Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
13	esv3475027	chr6:29733297-29922699	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
14	esv3475028	chr6:29733297-29922699	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	esv3420260	chr6:29734457-29835593	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
16	esv3330285	chr6:29736281-29881328	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
17	nsv883536	chr6:29746023-29760819	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv883537	chr6:29746023-29767611	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv883538	chr6:29748206-29760819	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv883539	chr6:29748206-29780529	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	esv3396224	chr6:29754243-29888093	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
22	nsv965702	chr6:29758408-29798943	Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29758400-29759400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:29758400-29760000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:29758600-29759400	Enhancers	Esophagus	oesophagus
4	chr6:29758600-29759400	Enhancers	Pancreas	Pancrea
5	chr6:29758600-29759600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:29758600-29759800	Bivalent Enhancer	Stomach Mucosa	stomach
7	chr6:29758600-29760600	Active TSS	Placenta Amnion	Placenta Amnion
8	chr6:29758800-29759600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr6:29758800-29759600	Enhancers	Duodenum Mucosa	Duodenum
10	chr6:29758800-29759600	Flanking Active TSS	Hela-S3	cervix
11	chr6:29759000-29759400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr6:29759000-29759400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:29759000-29759400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
14	chr6:29759000-29759400	Enhancers	Brain Cingulate Gyrus	brain
15	chr6:29759000-29759400	Enhancers	NHDF-Ad	bronchial
16	chr6:29759000-29759600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:29759000-29759600	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr6:29759000-29759600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr6:29759000-29759600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:29759000-29759600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:29759000-29759800	Active TSS	Brain Inferior Temporal Lobe	brain
22	chr6:29759000-29760600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:29759000-29760800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:29759000-29761000	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr6:29759200-29759400	Bivalent/Poised TSS	Primary T cells fromperipheralblood	blood
26	chr6:29759200-29759400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr6:29759200-29759400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:29759200-29759400	Flanking Active TSS	HMEC	breast
29	chr6:29759200-29759600	Enhancers	Liver	Liver
30	chr6:29759200-29759800	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr6:29759200-29759800	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
32	chr6:29759200-29760000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
33	chr6:29759200-29760800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:29759200-29760800	Active TSS	Brain Hippocampus Middle	brain
35	chr6:29759200-29760800	Active TSS	NHEK	skin
36	chr6:29759200-29761000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
37	chr6:29759200-29761000	Active TSS	Brain Angular Gyrus	brain
38	chr6:29759200-29761200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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